CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX85630	Canola	plastid	95.35	95.59
CDY09826	Canola	plastid	87.04	84.96
AT5G13730.1	Thale cress	plastid	86.8	84.73
VIT_13s0064g00190.t01	Wine grape	nucleus	44.74	57.37
PGSC0003DMT400017455	Potato	nucleus	34.23	51.09
Bra023430.1-P	Field mustard	plastid	90.71	51.03
Solyc01g087690.1.1	Tomato	nucleus	42.3	41.09
GSMUA_Achr4P18530_001	Banana	plastid	40.83	35.68
CDY66142	Canola	nucleus	24.45	29.59
CDX79708	Canola	endoplasmic reticulum, extracellular	9.78	26.85
CDY18468	Canola	plastid	28.61	21.51
CDY52962	Canola	nucleus	24.45	20.83
CDY56127	Canola	nucleus	24.45	20.37
CDX97496	Canola	plastid	27.14	19.44
CDY31138	Canola	plastid	27.14	19.37
CDX93555	Canola	plastid	26.89	19.2
CDX95052	Canola	plastid	26.65	18.7
CDY19846	Canola	nucleus	19.07	15.98
CDX87140	Canola	plastid	19.56	15.9
CDX80416	Canola	nucleus	19.8	14.44
CDX76185	Canola	plastid	23.47	14.33
CDY13153	Canola	plastid	23.47	14.29
CDX88078	Canola	cytosol, mitochondrion, nucleus, vacuole	19.56	13.63
CDY54028	Canola	cytosol	0.0	0.0
CDX67575	Canola	cytosol	0.0	0.0
CDY59157	Canola	cytosol	0.0	0.0
CDX73516	Canola	cytosol	0.0	0.0

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.601.10	MapMan:15.6.2.1	GO:A0A078DP88	EnsemblPlants:CDX91100	ProteinID:CDX91100
ProteinID:CDX91100.1	GO:GO:0003674	GO:GO:0003700	GO:GO:0006139	GO:GO:0006352	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00151880001	InterPro:IPR036388
PFAM:PF04539	PFAM:PF04542	PFAM:PF04545	PRINTS:PR00046	ScanProsite:PS00715	PANTHER:PTHR30603
PANTHER:PTHR30603:SF24	InterPro:RNA_pol_sigma-70_dom	InterPro:RNA_pol_sigma70	InterPro:RNA_pol_sigma70_r2	InterPro:RNA_pol_sigma70_r3	InterPro:RNA_pol_sigma70_r4
InterPro:RNA_pol_sigma_r2	InterPro:RNA_pol_sigma_r3/r4-like	SUPFAM:SSF88659	SUPFAM:SSF88946	TIGRFAMs:TIGR02937	UniParc:UPI0004EBA7A9
InterPro:WH-like_DNA-bd_sf	SEG:seg	:	:	:	:

Description

BnaC02g04970D

Coordinates

chrLK031865:+:772932..774720

Molecular Weight (calculated)

45997.7 Da

IEP (calculated)

10.405

GRAVY (calculated)

-0.473

Length

409 amino acids

Sequence
(BLAST)

001: MVPTTATATM CPSPPLPTIS PLLRTSHQCQ PSPSSPSPSS IKLGTTLFSS EATVDDSSVM TKPVKWGSQI EKRRKKRRRR RAGLDPEEEE NVVPAVETEP
101: KAVSVSVGAS RSGFLSRLEE VQLCLYLKEG AKLENLETSV EENVMVSLFG NGNKKRSSAN EILCRRREAR EKITRCYRRL VVSIATGYQG KGLNLQDLIQ
201: EGSIGLLRGA ERFDPERGYK LSTYVYWWIK QAILRAIAHK SRLVKLPGSM WELTAKVAEA SNVLSRKLRR IPSCEEIANH LNIHVSAVRL AVERSRSPVS
301: LDRVLSHNGR MTLQEIVRGP DETRPEEMVR KEHMKHEIKQ LLGTLTARES RVLGLYFGLN GETPMSFEEI GKKLKLSRER VRQINGIALT KLRSVHNVND
401: LKIYYSSSE

Best Arabidopsis Sequence Match ( AT5G13730.1 )
(BLAST)

001: MATTIPTTAT ATMCPSPPVP TISPLLRTTH QCQPSPSLSS PFSIKLSTAL VCGDTTVDRV VDSSVMIKPE KWGIQSEKRR KRRRRRRVGY ERLEPEEEEN
101: AGVEAEAETI SVPVVGASRS GFLSRLEEVQ LCLYLKEGAK LENLGTSVEE NEMVSVLLAS GRGKKKRSAN EILCRRKEAR EKITRCYRRL VVSIATGYQG
201: KGLNLQDLIQ EGSIGLLRGA ERFDPDRGYK LSTYVYWWIK QAILRAIAHK SRLVKLPGSM WELTAKVAEA SNVLTRKLRR QPSCEEIAEH LNLNVSAVRL
301: AVERSRSPVS LDRVASQNGR MTLQEIVRGP DETRPEEMVK REHMKHEIEQ LLGSLTARES RVLGLYFGLN GETPMSFEEI GKSLKLSRER VRQINGIALK
401: KLRNVHNVND LKIYYSSSE

Arabidopsis Description

SIGDRNA polymerase sigma factor sigD, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9ZSL6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.