CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra008807.1-P	Field mustard	plastid	93.79	96.8
CDX85630	Canola	plastid	86.16	88.48
AT5G13730.1	Thale cress	plastid	87.35	87.35
CDX91100	Canola	plastid	84.96	87.04
VIT_13s0064g00190.t01	Wine grape	nucleus	44.15	57.99
PGSC0003DMT400017455	Potato	nucleus	33.65	51.46
Solyc01g087690.1.1	Tomato	nucleus	42.0	41.81
GSMUA_Achr4P18530_001	Banana	plastid	39.62	35.47
CDY66142	Canola	nucleus	23.15	28.7
CDX79708	Canola	endoplasmic reticulum, extracellular	9.55	26.85
CDY52962	Canola	nucleus	24.82	21.67
CDY56127	Canola	nucleus	24.82	21.18
CDY18468	Canola	plastid	26.73	20.59
CDX97496	Canola	plastid	26.73	19.61
CDY31138	Canola	plastid	26.73	19.55
CDX93555	Canola	plastid	26.49	19.37
CDX95052	Canola	plastid	26.25	18.87
CDY19846	Canola	nucleus	19.33	16.6
CDX87140	Canola	plastid	19.81	16.5
CDX76185	Canola	plastid	24.11	15.07
CDY13153	Canola	plastid	24.11	15.03
CDX80416	Canola	nucleus	19.81	14.79
CDX88078	Canola	cytosol, mitochondrion, nucleus, vacuole	19.57	13.97
CDY59157	Canola	cytosol	0.0	0.0
CDY54028	Canola	cytosol	0.0	0.0
CDX73516	Canola	cytosol	0.0	0.0
CDX67575	Canola	cytosol	0.0	0.0

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.601.10	MapMan:15.6.2.1	GO:A0A078F8X8	UniProt:A0A078F8X8	EnsemblPlants:CDY09826
ProteinID:CDY09826	ProteinID:CDY09826.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0006139	GO:GO:0006352	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016987	GO:GO:2000142	EnsemblPlantsGene:GSBRNA2T00031550001
InterPro:IPR036388	PFAM:PF04539	PFAM:PF04542	PFAM:PF04545	PRINTS:PR00046	ScanProsite:PS00715
PANTHER:PTHR30603	PANTHER:PTHR30603:SF24	InterPro:RNA_pol_sigma-70_dom	InterPro:RNA_pol_sigma70	InterPro:RNA_pol_sigma70_r2	InterPro:RNA_pol_sigma70_r3
InterPro:RNA_pol_sigma70_r4	InterPro:RNA_pol_sigma_r2	InterPro:RNA_pol_sigma_r3/r4-like	SUPFAM:SSF88659	SUPFAM:SSF88946	TIGRFAMs:TIGR02937
UniParc:UPI0004EE27C6	InterPro:WH-like_DNA-bd_sf	SEG:seg	:	:	:

Description

BnaC09g43350DBnaC09g43350D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F8X8]

Coordinates

chrLK031999:-:314649..316569

Molecular Weight (calculated)

46988.7 Da

IEP (calculated)

10.295

GRAVY (calculated)

-0.461

Length

419 amino acids

Sequence
(BLAST)

001: MATIPTTATA TMCPSPLPTI SPLLRSSHQC QPSPSSSSPS SIKLGTTLFF NEATVDRAAE SSVMIKPEKW GSQLEKRRKR RRRRRAGFER LEPEEDDDVD
101: QVVEPVAEPV SVPVGASRSG FLSRSEEVQL CLYLKEGAIL ENLGASVEEN GMVSVLLSST SKGKKKRSAN EILCRRREAR EKITRCYRRL VVSIATGYQG
201: KGLNLQDLIQ EGSIGLLRGA ERFDPERGYK LSTYVYWWIK QAILRAIAHK SRLVKLPGSM WELTAKVAEA SNVLTRKLRR APSSEEIAEH LNINVSAVRL
301: AVDRSRTPVS LDRVASHYGR MTLQEIVRGP DETRPEEMVK REHMKEGIKQ LLGTLTARES RVLGLYFGLN GETPMSFEEI GKSLKLSRER VRQINGIALA
401: KLRNVHNVND LRIYYSSSE

Best Arabidopsis Sequence Match ( AT5G13730.1 )
(BLAST)

001: MATTIPTTAT ATMCPSPPVP TISPLLRTTH QCQPSPSLSS PFSIKLSTAL VCGDTTVDRV VDSSVMIKPE KWGIQSEKRR KRRRRRRVGY ERLEPEEEEN
101: AGVEAEAETI SVPVVGASRS GFLSRLEEVQ LCLYLKEGAK LENLGTSVEE NEMVSVLLAS GRGKKKRSAN EILCRRKEAR EKITRCYRRL VVSIATGYQG
201: KGLNLQDLIQ EGSIGLLRGA ERFDPDRGYK LSTYVYWWIK QAILRAIAHK SRLVKLPGSM WELTAKVAEA SNVLTRKLRR QPSCEEIAEH LNLNVSAVRL
301: AVERSRSPVS LDRVASQNGR MTLQEIVRGP DETRPEEMVK REHMKHEIEQ LLGSLTARES RVLGLYFGLN GETPMSFEEI GKSLKLSRER VRQINGIALK
401: KLRNVHNVND LKIYYSSSE

Arabidopsis Description

SIGDRNA polymerase sigma factor sigD, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9ZSL6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.