Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX73516 | Canola | cytosol | 100.0 | 100.0 |
| CDY54028 | Canola | cytosol | 100.0 | 100.0 |
| CDX67575 | Canola | cytosol | 100.0 | 100.0 |
| CDX76185 | Canola | plastid | 98.78 | 12.09 |
| CDY13153 | Canola | plastid | 98.78 | 12.05 |
| CDX79708 | Canola | endoplasmic reticulum, extracellular | 1.22 | 0.67 |
| CDX93555 | Canola | plastid | 2.44 | 0.35 |
| CDX95052 | Canola | plastid | 2.44 | 0.34 |
| CDY66142 | Canola | nucleus | 1.22 | 0.3 |
| CDY18468 | Canola | plastid | 1.22 | 0.18 |
| CDX97496 | Canola | plastid | 1.22 | 0.18 |
| CDY31138 | Canola | plastid | 1.22 | 0.17 |
| CDX91100 | Canola | plastid | 0.0 | 0.0 |
| CDX88078 | Canola | cytosol, mitochondrion, nucleus, vacuole | 0.0 | 0.0 |
| CDX87140 | Canola | plastid | 0.0 | 0.0 |
| CDY09826 | Canola | plastid | 0.0 | 0.0 |
| CDX85630 | Canola | plastid | 0.0 | 0.0 |
| CDY19846 | Canola | nucleus | 0.0 | 0.0 |
| CDY52962 | Canola | nucleus | 0.0 | 0.0 |
| CDX80416 | Canola | nucleus | 0.0 | 0.0 |
| CDY56127 | Canola | nucleus | 0.0 | 0.0 |
Protein Annotations
| MapMan:17.1.3.1.23 | Gene3D:3.30.1230.20 | GO:A0A078J4Z5 | UniProt:A0A078J4Z5 | ProteinID:CDY54028.1 | EnsemblPlants:CDY59157 |
| ProteinID:CDY59157 | ProteinID:CDY59157.1 | GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | GO:GO:0030529 | EnsemblPlantsGene:GSBRNA2T00025627001 |
| InterPro:IPR038579 | PFAM:PD006584 | PFAM:PF01249 | PIRSF:PIRSF002148 | ScanProsite:PS00996 | PANTHER:PTHR10442 |
| PANTHER:PTHR10442:SF7 | InterPro:Ribosomal_S21e | InterPro:Ribosomal_S21e_CS | InterPro:Ribosomal_S21e_sf | UniParc:UPI0001890D4B | : |
Description
BnaC06g42550D40S ribosomal protein S21 [Source:UniProtKB/TrEMBL;Acc:A0A078J4Z5]
Coordinates
chrLK033734:-:2274..3350
Molecular Weight (calculated)
9095.8 Da
IEP (calculated)
7.416
GRAVY (calculated)
-0.496
Length
82 amino acids
Sequence
(BLAST)
(BLAST)
1: MQNEEGVVTE LYIPRKCSAT NRLITSKDHA SVQLNIGHLD ADGIYTGQFT TLALCGFVRA QGDADSGVDR LWQKKKVETK QQ
1: MENDAGQVTE LYIPRKCSAT NRMITSKDHA SVQLNIGHLD ANGLYTGQFT TFALCGFVRA QGDADSGVDR LWQKKKVEAK QQ
Arabidopsis Description
RPS21B40S ribosomal protein S21-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M337]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.