CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX71154
CDX73773
CDX77962
CDX90677
CDY02832
CDY28989
CDY32688
CDY61025
CDY67893

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G36990.1	CDX73773	AT3G50910.1	21798944
AT2G36990.1	CDX77962	AT3G50910.1	21798944
AT2G36990.1	CDX90677	AT3G50910.1	21798944
AT2G36990.1	CDY28989	AT3G50910.1	21798944
AT2G36990.1	CDY67893	AT3G50910.1	21798944
AT2G36990.1	CDX71154	AT5G58720.1	21798944
AT2G36990.1	CDY02832	AT5G58720.1	21798944
AT2G36990.1	CDY32688	AT5G58720.1	21798944
AT2G36990.1	CDY61025	AT5G58720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY66142	Canola	nucleus	61.76	99.41
Bra017213.1-P	Field mustard	plastid	96.32	98.31
AT2G36990.1	Thale cress	plastid	88.05	87.57
CDX79708	Canola	endoplasmic reticulum, extracellular	22.24	81.21
GSMUA_Achr4P30300_001	Banana	nucleus	22.43	60.7
VIT_08s0040g01560.t01	Wine grape	plastid	57.35	55.62
Solyc09g008040.2.1	Tomato	nucleus, plastid	55.15	53.29
PGSC0003DMT400055506	Potato	nucleus, plastid	55.88	52.23
KRG96007	Soybean	nucleus	51.47	50.54
KRH67719	Soybean	nucleus	51.29	50.36
KRH32532	Soybean	nucleus, plastid	52.76	49.91
KRH19920	Soybean	plastid	52.39	49.65
GSMUA_Achr11P...	Banana	nucleus	47.79	44.91
Os08t0242800-01	Rice	plastid	41.18	39.16
KXG37075	Sorghum	plastid	39.71	38.92
TraesCS5D01G551200.1	Wheat	plastid	39.89	38.82
TraesCS5B01G563800.2	Wheat	plastid	40.07	38.72
TraesCS4A01G315700.3	Wheat	plastid	40.26	38.69
HORVU5Hr1G125110.10	Barley	plastid	39.15	38.52
Zm00001d012810_P003	Maize	plastid	25.18	32.01
CDX91100	Canola	plastid	21.51	28.61
CDX93555	Canola	plastid	29.96	28.45
CDX85630	Canola	plastid	21.32	28.43
CDX97496	Canola	plastid	29.6	28.2
CDY31138	Canola	plastid	29.41	27.92
CDX95052	Canola	plastid	29.41	27.44
CDY09826	Canola	plastid	20.59	26.73
CDY52962	Canola	nucleus	20.77	23.54
CDY56127	Canola	nucleus	20.77	23.01
CDX87140	Canola	plastid	20.77	22.47
CDY19846	Canola	nucleus	19.49	21.72
CDX80416	Canola	nucleus	20.04	19.43
CDX88078	Canola	cytosol, mitochondrion, nucleus, vacuole	19.85	18.4
CDX76185	Canola	plastid	19.49	15.82
CDY13153	Canola	plastid	19.12	15.48
CDX73516	Canola	cytosol	0.18	1.22
CDX67575	Canola	cytosol	0.18	1.22
CDY54028	Canola	cytosol	0.18	1.22
CDY59157	Canola	cytosol	0.18	1.22

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.601.10	MapMan:15.6.2.1	GO:A0A078G1I1	UniProt:A0A078G1I1	EnsemblPlants:CDY18468
ProteinID:CDY18468	ProteinID:CDY18468.1	GO:GO:0001053	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006139	GO:GO:0006351	GO:GO:0006352	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0016043	GO:GO:0016987
GO:GO:2000142	EnsemblPlantsGene:GSBRNA2T00005470001	InterPro:IPR036388	PFAM:PF04539	PFAM:PF04542	PFAM:PF04545
PIRSF:PIRSF000767	PRINTS:PR00046	ScanProsite:PS00715	ScanProsite:PS00716	PANTHER:PTHR30603	PANTHER:PTHR30603:SF9
InterPro:RNA_pol_sigma-70_dom	InterPro:RNA_pol_sigma70	InterPro:RNA_pol_sigma70_r2	InterPro:RNA_pol_sigma70_r3	InterPro:RNA_pol_sigma70_r4	InterPro:RNA_pol_sigma_SigB/C/D/F
InterPro:RNA_pol_sigma_r2	InterPro:RNA_pol_sigma_r3/r4-like	SUPFAM:SSF88659	SUPFAM:SSF88946	TIGRFAMs:TIGR02937	UniParc:UPI0004EF1921
InterPro:WH-like_DNA-bd_sf	SEG:seg	:	:	:	:

Description

BnaA04g21190DRNA polymerase sigma factor [Source:UniProtKB/TrEMBL;Acc:A0A078G1I1]

Coordinates

chrLK032085:+:679401..682725

Molecular Weight (calculated)

61252.4 Da

IEP (calculated)

9.964

GRAVY (calculated)

-0.570

Length

544 amino acids

Sequence
(BLAST)

001: MEATTRNLVS SSPSFPTKTH LKNGFSSPSS VVMLHEQTTT PVINSRHLAS LSRHFPASVL SQEPREESRP PPLSHSLRED RTSQQLTLER RQFDGLVSSR
101: EDEKFEQQLL QSAGLWNLLI SPVTAEKHLP TVVSPLPDAE LCDVVALAHK ALSASKQAAL LAEDSETAAP PTSSSMSLEE GTVVRSKKLL ERRGRNRRAP
201: KPNGLDNESS YLPQKSNAKK KMRQGFDNDD ALQLFLWGPE TKQLLTAKEE AELITHIQNL IKLEKVKTKL ESQNGCEPTI AEWAEALGIS GPVLKSEIHR
301: GRSSREKLIT ANLRLVVHIA KQYQNRGLNF QDLLQEGSMG LMKSVEKFKP QSGCRFATYA YWWIRQSIRK SIFQNSRTIR LPENVYMLLG KVSEARKTCV
401: QEGNYLPSKE ELAGHVGVST EKLDKLLYNT RTPLSMQQPI WSDQDITFQE VTPDSGIETP DMSVGKQMMR NHVRNLLNVL SPKERKIIKL RFGIDGGKQR
501: SLSEIGEIYG LSKERVRQLE SRALYRLKQN MNSHGLNAYA DLLV

Best Arabidopsis Sequence Match ( AT2G36990.1 )
(BLAST)

001: MEATRNLVSS SPSFQTKTHL KSSYSSPSSV VMLHDQTTTP VVNSRHLNSL SRHFPASVLS QEPREESRPL SHALRDDRTS QLTLERRQFD ELVSSREDEK
101: FEQQLLHSTG LWNLLISPLT SETKLPAVVS PLADAELCDV VALAQKALSA SKQAALLVDD TEANPSDNIK DSLSTSSSMS LPEKGNIVRS KRQLERRAKN
201: RRAPKSNDVD DEGYVPQKTS AKKKYKQGAD NDDALQLFLW GPETKQLLTA KEEAELISHI QHLLKLEKVK TKLESQNGCE PTIGEWAEAM GISSPVLKSD
301: IHRGRSSREK LITANLRLVV HIAKQYQNRG LNFQDLLQEG SMGLMKSVEK FKPQSGCRFA TYAYWWIRQS IRKSIFQNSR TIRLPENVYM LLGKVSEARK
401: TCVQEGNYRP SKEELAGHVG VSTEKLDKLL YNTRTPLSMQ QPIWSDQDTT FQEITPDSGI ETPTMSVGKQ LMRNHVRNLL NVLSPKERRI IKLRFGIDGG
501: KQRSLSEIGE IYGLSKERVR QLESRALYRL KQNMNSHGLH AYADLLV

Arabidopsis Description

SIGFRNA polymerase sigma factor sigF, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LD95]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.