Factsheet for HORVU5Hr1G125110.10

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU3Hr1G030600.8
HORVU6Hr1G068770.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G36990.1	HORVU6Hr1G068770.1	AT3G50910.1	21798944
AT2G36990.1	HORVU3Hr1G030600.8	AT5G58720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G315700.3	Wheat	plastid	92.41	90.28
TraesCS5B01G563800.2	Wheat	plastid	91.5	89.88
TraesCS5D01G551200.1	Wheat	plastid	90.6	89.62
Os08t0242800-01	Rice	plastid	73.24	70.8
KXG37075	Sorghum	plastid	70.71	70.45
Zm00001d012810_P003	Maize	plastid	52.08	67.29
GSMUA_Achr4P30300_001	Banana	nucleus	19.71	54.23
CDY66142	Canola	nucleus	30.2	49.41
GSMUA_Achr11P...	Banana	nucleus	42.5	40.59
CDX79708	Canola	endoplasmic reticulum, extracellular	10.85	40.27
Bra017213.1-P	Field mustard	plastid	37.79	39.21
CDY18468	Canola	plastid	38.52	39.15
VIT_08s0040g01560.t01	Wine grape	plastid	39.42	38.86
AT2G36990.1	Thale cress	plastid	37.43	37.84
KRG96007	Soybean	nucleus	37.79	37.73
KRH67719	Soybean	nucleus	37.25	37.18
Solyc09g008040.2.1	Tomato	nucleus, plastid	37.79	37.12
PGSC0003DMT400055506	Potato	nucleus, plastid	37.43	35.57
KRH32532	Soybean	nucleus, plastid	36.89	35.48
KRH19920	Soybean	plastid	36.53	35.19
HORVU4Hr1G045100.1	Barley	nucleus	6.15	32.38
HORVU7Hr1G069520.2	Barley	nucleus	16.09	29.67
HORVU4Hr1G044910.10	Barley	nucleus	24.05	27.88
HORVU4Hr1G060200.1	Barley	plastid	24.23	24.45

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.601.10	MapMan:15.6.2.1	ncoils:Coil	GO:GO:0001053	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0006351	GO:GO:0006352	GO:GO:0006355
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536
GO:GO:0009628	GO:GO:0009791	GO:GO:0009987	GO:GO:0016043	GO:GO:0016987	GO:GO:0045893
GO:GO:0071482	GO:GO:0071483	GO:GO:0090351	GO:GO:2000142	EnsemblPlantsGene:HORVU5Hr1G125110	EnsemblPlants:HORVU5Hr1G125110.10
InterPro:IPR036388	UniProt:M0WB57	PFAM:PF04539	PFAM:PF04542	PFAM:PF04545	PIRSF:PIRSF000767
PRINTS:PR00046	PANTHER:PTHR30603	PANTHER:PTHR30603:SF9	InterPro:RNA_pol_sigma-70_dom	InterPro:RNA_pol_sigma70	InterPro:RNA_pol_sigma70_r2
InterPro:RNA_pol_sigma70_r3	InterPro:RNA_pol_sigma70_r4	InterPro:RNA_pol_sigma_SigB/C/D/F	InterPro:RNA_pol_sigma_r2	InterPro:RNA_pol_sigma_r3/r4-like	SUPFAM:SSF88659
SUPFAM:SSF88946	TIGRFAMs:TIGR02937	UniParc:UPI000294810C	InterPro:WH-like_DNA-bd_sf	SEG:seg	:

Description

RNA polymerase sigma factor [Source:UniProtKB/TrEMBL;Acc:M0WB57]

Coordinates

chrchr5H:-:668031724..668034893

Molecular Weight (calculated)

62488.7 Da

IEP (calculated)

9.554

GRAVY (calculated)

-0.577

Length

553 amino acids

Sequence
(BLAST)

001: MNSSRSLLTS PLFPTSSPNF RGAASSPSPS RTSVCAVPMI HDSTGGRAST ACHYSPSLVA EEQHAHGAVS LKGEKALLEF LLDMALEQHT EGKSLTGEDG
101: AEGEFESYLR GLQRQVIYQQ AFGEKNSFIP VTTSTSTPDA QSGAILDRGA TSAATVMKEV TILTEESGTS VESKHPYDKL LSNGQVFIRS TRLLERRSKK
201: RNVPRASTST DVVQCSVADS KKKDRPKKYG RVLGPDEPFR LFLRDRETTE FLTAKEERHL FSQIQNLMRL EEAQRRLEEQ CGREPTLPEW AQAVGMSCKD
301: LQSSIHIGRR CREKMARSNF RLVIHVARKY QGYGLDIEDL VQDGCCGLMK TFEKFNPSKG CRFPTYAYWW IRQAIKKSIF KHSRLIRLPE SVYARLKKVG
401: KARLECILEG EQPTNQNVAR RAGISIEKLA KLKAKTRKPR SMQDQVWSND AVTFQEITED PNIDSPDLVV DRIMMRQQVR EFLGILSTRE KEIVEHRFGI
501: YDGEPKTLHV IGDMYGLSKE RIRQLQNRAL DKLKRSVSTQ GFDVYLDLLT SND

Best Arabidopsis Sequence Match ( AT1G08540.1 )
(BLAST)

001: MSSCLLPQFK CPPDSFSIHF RTSFCAPKHN KGSVFFQPQC AVSTSPALLT SMLDVAKLRL PSFDTDSDSL ISDRQWTYTR PDGPSTEAKY LEALASETLL
101: TSDEAVVVAA AAEAVALARA AVKVAKDATL FKNSNNTNLL TSSTADKRSK WDQFTEKERA GILGHLAVSD NGIVSDKITA SASNKESIGD LESEKQEEVE
201: LLEEQPSVSL AVRSTRQTER KARRAKGLEK TASGIPSVKT GSSPKKKRLV AQEVDHNDPL RYLRMTTSSS KLLTVREEHE LSAGIQDLLK LERLQTELTE
301: RSGRQPTFAQ WASAAGVDQK SLRQRIHHGT LCKDKMIKSN IRLVISIAKN YQGAGMNLQD LVQEGCRGLV RGAEKFDATK GFKFSTYAHW WIKQAVRKSL
401: SDQSRMIRLP FHMVEATYRV KEARKQLYSE TGKHPKNEEI AEATGLSMKR LMAVLLSPKP PRSLDQKIGM NQNLKPSEVI ADPEAVTSED ILIKEFMRQD
501: LDKVLDSLGT REKQVIRWRF GMEDGRMKTL QEIGEMMGVS RERVRQIESS AFRKLKNKKR NNHLQQYLVA QS

Arabidopsis Description

SIGBRNA polymerase sigma factor sigB [Source:UniProtKB/Swiss-Prot;Acc:O22056]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.