Factsheet for GSMUA_Achr4P30300_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
mitochondrion 4
nucleus 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr1P12060_001
GSMUA_Achr2P22980_001
GSMUA_Achr6P08980_001
GSMUA_Achr7P14310_001
GSMUA_Achr7P14320_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G36990.1	GSMUA_Achr1P12060_001	AT3G50910.1	21798944
AT2G36990.1	GSMUA_Achr2P22980_001	AT3G50910.1	21798944
AT2G36990.1	GSMUA_Achr6P08980_001	AT3G50910.1	21798944
AT2G36990.1	GSMUA_Achr7P14310_001	AT5G58720.1	21798944
AT2G36990.1	GSMUA_Achr7P14320_001	AT5G58720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX79708	Canola	endoplasmic reticulum, extracellular	34.33	46.31
CDY66142	Canola	nucleus	60.7	36.09
GSMUA_Achr11P...	Banana	nucleus	71.64	24.87
VIT_08s0040g01560.t01	Wine grape	plastid	63.68	22.82
Bra017213.1-P	Field mustard	plastid	60.2	22.7
CDY18468	Canola	plastid	60.7	22.43
AT2G36990.1	Thale cress	plastid	60.2	22.12
Solyc09g008040.2.1	Tomato	nucleus, plastid	61.19	21.85
KRH67719	Soybean	nucleus	60.2	21.84
KRG96007	Soybean	nucleus	59.2	21.48
PGSC0003DMT400055506	Potato	nucleus, plastid	61.19	21.13
KRH19920	Soybean	plastid	59.2	20.73
KRH32532	Soybean	nucleus, plastid	59.2	20.7
Os08t0242800-01	Rice	plastid	57.71	20.28
TraesCS5D01G551200.1	Wheat	plastid	55.22	19.86
TraesCS5B01G563800.2	Wheat	plastid	55.22	19.72
HORVU5Hr1G125110.10	Barley	plastid	54.23	19.71
TraesCS4A01G315700.3	Wheat	plastid	55.22	19.61
KXG37075	Sorghum	plastid	53.23	19.28
GSMUA_Achr1P10700_001	Banana	nucleus	30.35	14.42
GSMUA_Achr7P04860_001	Banana	nucleus	35.82	13.14
GSMUA_Achr7P17330_001	Banana	nucleus, plastid	35.32	12.96
GSMUA_Achr11P...	Banana	nucleus	29.35	12.85
GSMUA_Achr7P24590_001	Banana	plastid	31.34	12.48
GSMUA_Achr4P18530_001	Banana	plastid	28.36	12.18
GSMUA_Achr4P01060_001	Banana	golgi, mitochondrion, nucleus, plastid	32.84	11.58
Zm00001d012810_P003	Maize	plastid	24.38	11.45

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.601.10	MapMan:15.6.2.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006352	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016987	GO:GO:2000142
EnsemblPlantsGene:GSMUA_Achr4G30300_001	EnsemblPlants:GSMUA_Achr4P30300_001	EnsemblPlants:GSMUA_Achr4T30300_001	InterPro:IPR036388	UniProt:M0STE2	PFAM:PF04539
PFAM:PF04542	PFAM:PF04545	PRINTS:PR00046	ScanProsite:PS00716	PANTHER:PTHR30603	PANTHER:PTHR30603:SF9
InterPro:RNA_pol_sigma-70_dom	InterPro:RNA_pol_sigma70	InterPro:RNA_pol_sigma70_r2	InterPro:RNA_pol_sigma70_r3	InterPro:RNA_pol_sigma70_r4	InterPro:RNA_pol_sigma_r2
InterPro:RNA_pol_sigma_r3/r4-like	SUPFAM:SSF88659	SUPFAM:SSF88946	TIGRFAMs:TIGR02937	UniParc:UPI00029503CD	InterPro:WH-like_DNA-bd_sf

Description

Putative RNA polymerase sigma factor rpoD1 [Source:GMGC_GENE;Acc:GSMUA_Achr4G30300_001]

Coordinates

chr4:+:27970996..27972704

Molecular Weight (calculated)

23878.4 Da

IEP (calculated)

10.509

GRAVY (calculated)

-0.501

Length

201 amino acids

Sequence
(BLAST)

001: MKSLEKFKPN AGCRFPTYSY WWIRQSIRKA IFQNSRIIRL PDNIYAFLKE IKYARRLCIQ EGRLPTNEEI AKRVGITVKK LEKLLLYFRD PVSIQEHAWQ
101: NVTFQEITAD PGVEIPDLIV AKQLMRQHVR DILKTLKPKE RKIIQYRFGM HENKKKTLSE IGDIYGLSNE RIRQLESRAL NKLKEWCLTT QGLKAYRDLL
201: V

Best Arabidopsis Sequence Match ( AT2G36990.1 )
(BLAST)

001: MEATRNLVSS SPSFQTKTHL KSSYSSPSSV VMLHDQTTTP VVNSRHLNSL SRHFPASVLS QEPREESRPL SHALRDDRTS QLTLERRQFD ELVSSREDEK
101: FEQQLLHSTG LWNLLISPLT SETKLPAVVS PLADAELCDV VALAQKALSA SKQAALLVDD TEANPSDNIK DSLSTSSSMS LPEKGNIVRS KRQLERRAKN
201: RRAPKSNDVD DEGYVPQKTS AKKKYKQGAD NDDALQLFLW GPETKQLLTA KEEAELISHI QHLLKLEKVK TKLESQNGCE PTIGEWAEAM GISSPVLKSD
301: IHRGRSSREK LITANLRLVV HIAKQYQNRG LNFQDLLQEG SMGLMKSVEK FKPQSGCRFA TYAYWWIRQS IRKSIFQNSR TIRLPENVYM LLGKVSEARK
401: TCVQEGNYRP SKEELAGHVG VSTEKLDKLL YNTRTPLSMQ QPIWSDQDTT FQEITPDSGI ETPTMSVGKQ LMRNHVRNLL NVLSPKERRI IKLRFGIDGG
501: KQRSLSEIGE IYGLSKERVR QLESRALYRL KQNMNSHGLH AYADLLV

Arabidopsis Description

SIGFRNA polymerase sigma factor sigF, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LD95]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.