Factsheet for GSMUA_Achr7P17330_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 5
nucleus 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P04860_001	Banana	nucleus	70.26	70.26
KRH51354	Soybean	nucleus	57.3	62.8
VIT_15s0024g00640.t01	Wine grape	plastid	64.42	61.39
KRH60664	Soybean	nucleus	58.94	57.27
AT1G08540.1	Thale cress	plastid	58.58	56.12
CDX97496	Canola	plastid	58.03	55.69
CDY31138	Canola	plastid	58.03	55.5
Bra030732.1-P	Field mustard	plastid	57.66	55.44
Bra018617.1-P	Field mustard	plastid	57.12	54.62
Solyc01g081490.2.1	Tomato	nucleus	60.95	54.49
CDX93555	Canola	plastid	56.93	54.45
PGSC0003DMT400079883	Potato	plastid	60.77	54.32
CDX95052	Canola	plastid	57.3	53.86
Os11t0448400-02	Rice	nucleus	39.78	51.54
HORVU4Hr1G045100.1	Barley	nucleus	9.85	51.43
HORVU4Hr1G044910.10	Barley	nucleus	43.25	49.69
TraesCS4B01G163500.1	Wheat	plastid	45.8	45.97
OQU83379	Sorghum	plastid	44.89	45.81
TraesCS4A01G157100.1	Wheat	plastid	45.62	45.37
Zm00001d049160_P002	Maize	plastid	44.89	44.48
TraesCS4D01G154500.2	Wheat	plastid	45.44	44.31
EER95113	Sorghum	plastid	41.42	42.99
HORVU4Hr1G060200.1	Barley	plastid	42.34	42.34
Zm00001d028585_P001	Maize	plastid	40.69	42.23
TraesCS4B01G209300.1	Wheat	plastid	41.61	41.68
Os03t0271100-01	Rice	mitochondrion	41.06	41.67
TraesCS4D01G210000.1	Wheat	plastid	41.61	41.61
TraesCS4A01G095200.1	Wheat	plastid	41.42	41.42
GSMUA_Achr4P30300_001	Banana	nucleus	12.96	35.32
GSMUA_Achr1P10700_001	Banana	nucleus	21.53	27.9
GSMUA_Achr11P...	Banana	nucleus	22.45	26.8
GSMUA_Achr4P18530_001	Banana	plastid	21.35	25.0
GSMUA_Achr4P01060_001	Banana	golgi, mitochondrion, nucleus, plastid	25.73	24.74
GSMUA_Achr11P...	Banana	nucleus	25.91	24.52
GSMUA_Achr7P24590_001	Banana	plastid	19.16	20.79

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.601.10	MapMan:15.6.2.1	GO:GO:0001053	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006139	GO:GO:0006351	GO:GO:0006352	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0016043
GO:GO:0016987	GO:GO:2000142	EnsemblPlantsGene:GSMUA_Achr7G17330_001	EnsemblPlants:GSMUA_Achr7P17330_001	EnsemblPlants:GSMUA_Achr7T17330_001	InterPro:IPR036388
UniProt:M0TIC0	PFAM:PF04539	PFAM:PF04542	PFAM:PF04545	PIRSF:PIRSF000767	PRINTS:PR00046
ScanProsite:PS00716	PANTHER:PTHR30603	PANTHER:PTHR30603:SF25	InterPro:RNA_pol_sigma-70_dom	InterPro:RNA_pol_sigma70	InterPro:RNA_pol_sigma70_r2
InterPro:RNA_pol_sigma70_r3	InterPro:RNA_pol_sigma70_r4	InterPro:RNA_pol_sigma_SigB/C/D/F	InterPro:RNA_pol_sigma_r2	InterPro:RNA_pol_sigma_r3/r4-like	SUPFAM:SSF88659
SUPFAM:SSF88946	TIGRFAMs:TIGR02937	UniParc:UPI000296EDAE	InterPro:WH-like_DNA-bd_sf	SEG:seg	:

Description

Putative RNA polymerase sigma factor rpoD [Source:GMGC_GENE;Acc:GSMUA_Achr7G17330_001]

Coordinates

chr7:-:19449989..19454352

Molecular Weight (calculated)

61890.5 Da

IEP (calculated)

10.401

GRAVY (calculated)

-0.524

Length

548 amino acids

Sequence
(BLAST)

001: MYNSHYSFFT FLGTARARDS VSSRSQCIIS PATAVIEIEQ IPTLEAHSTD AIRPLKYTAA VGPPKKASTI ATLTPETLLT DEESLIAAAA AEAVALARAA
101: VEIARDAAQK IRKNPFTESD KLNHFTSEAN MHRLERVRFT ETESIKVMSS LIAEVHQENS TENPSEIDVF NLMHSEIEIK EMCHSKGIAV RSGRQTERRA
201: KRARAAKKDA SGVINVKRGT SGKKKRSSFQ EVDYSDPLRY LRGTTSTSKL LSAVEELELS KGIQDLLKLE RLREELVGRN GGQPTFAQWA TAAGIDQKTL
301: RKRLNDGTFC KDKMIKSNIR LVISIAKNYQ NAGLSLQDLV QEGYRGLVKG AEKFDASKGF KFSTYAHWWI KQAVRRSLSE QSRTIRLPFH MVEATYRVRE
401: AKKQLYSENG RHPDYVEVAV ATGLSMKRVE TVLLTPKAPR SLDQKIGINQ NLKPSEVMAD PEAETSEEIL IKKFMKADLN KVLDTLNPRE KQVLRWRFGL
501: DNERIKTLQE IGKLMGVSRE RIRQIESCAF RKLKSKKKMR NLRQYLIS

Best Arabidopsis Sequence Match ( AT1G08540.1 )
(BLAST)

001: MSSCLLPQFK CPPDSFSIHF RTSFCAPKHN KGSVFFQPQC AVSTSPALLT SMLDVAKLRL PSFDTDSDSL ISDRQWTYTR PDGPSTEAKY LEALASETLL
101: TSDEAVVVAA AAEAVALARA AVKVAKDATL FKNSNNTNLL TSSTADKRSK WDQFTEKERA GILGHLAVSD NGIVSDKITA SASNKESIGD LESEKQEEVE
201: LLEEQPSVSL AVRSTRQTER KARRAKGLEK TASGIPSVKT GSSPKKKRLV AQEVDHNDPL RYLRMTTSSS KLLTVREEHE LSAGIQDLLK LERLQTELTE
301: RSGRQPTFAQ WASAAGVDQK SLRQRIHHGT LCKDKMIKSN IRLVISIAKN YQGAGMNLQD LVQEGCRGLV RGAEKFDATK GFKFSTYAHW WIKQAVRKSL
401: SDQSRMIRLP FHMVEATYRV KEARKQLYSE TGKHPKNEEI AEATGLSMKR LMAVLLSPKP PRSLDQKIGM NQNLKPSEVI ADPEAVTSED ILIKEFMRQD
501: LDKVLDSLGT REKQVIRWRF GMEDGRMKTL QEIGEMMGVS RERVRQIESS AFRKLKNKKR NNHLQQYLVA QS

Arabidopsis Description

SIGBRNA polymerase sigma factor sigB [Source:UniProtKB/Swiss-Prot;Acc:O22056]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.