Factsheet for TraesCS4D01G154500.2

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G163500.1	Wheat	plastid	96.09	98.9
TraesCS4A01G157100.1	Wheat	plastid	95.37	97.28
HORVU4Hr1G044910.10	Barley	nucleus	81.14	95.6
Os11t0448400-02	Rice	nucleus	63.17	83.92
OQU83379	Sorghum	plastid	75.09	78.58
Zm00001d049160_P002	Maize	plastid	75.62	76.85
TraesCS4D01G210000.1	Wheat	plastid	60.5	62.04
KRH51354	Soybean	nucleus	42.88	48.2
GSMUA_Achr7P04860_001	Banana	nucleus	44.84	45.99
KRH60664	Soybean	nucleus	46.09	45.92
GSMUA_Achr7P17330_001	Banana	nucleus, plastid	44.31	45.44
VIT_15s0024g00640.t01	Wine grape	plastid	45.73	44.7
Bra030732.1-P	Field mustard	plastid	44.31	43.68
CDY31138	Canola	plastid	44.48	43.63
AT1G08540.1	Thale cress	plastid	44.13	43.36
CDX97496	Canola	plastid	43.95	43.26
Bra018617.1-P	Field mustard	plastid	43.95	43.11
CDX93555	Canola	plastid	43.95	43.11
CDX95052	Canola	plastid	43.95	42.37
Solyc01g081490.2.1	Tomato	nucleus	45.73	41.92
PGSC0003DMT400079883	Potato	plastid	45.37	41.6
TraesCS5D01G551200.1	Wheat	plastid	25.27	25.4
TraesCS1D01G440900.1	Wheat	plastid	24.56	23.88
TraesCS7D01G292000.1	Wheat	plastid	20.82	22.9
TraesCS1D01G436500.1	Wheat	plastid	17.44	19.84

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.20.120.1810	MapMan:15.6.2.1	GO:GO:0003674	GO:GO:0003700	GO:GO:0006139
GO:GO:0006352	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR036388	PFAM:PF04539	PFAM:PF04542	PFAM:PF04545	PIRSF:PIRSF000767	PRINTS:PR00046
ScanProsite:PS00716	PANTHER:PTHR30603	PANTHER:PTHR30603:SF25	InterPro:RNA_pol_sigma-70_dom	InterPro:RNA_pol_sigma70	InterPro:RNA_pol_sigma70_r2
InterPro:RNA_pol_sigma70_r3	InterPro:RNA_pol_sigma70_r4	InterPro:RNA_pol_sigma_SigB/C/D/F	InterPro:RNA_pol_sigma_r2	InterPro:RNA_pol_sigma_r3/r4-like	SUPFAM:SSF88659
SUPFAM:SSF88946	TIGRFAMs:TIGR02937	EnsemblPlantsGene:TraesCS4D01G154500	EnsemblPlants:TraesCS4D01G154500.2	InterPro:WH-like_DNA-bd_sf	TIGR:cd06171
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr4D:-:203635531..203645071

Molecular Weight (calculated)

62345.3 Da

IEP (calculated)

9.954

GRAVY (calculated)

-0.520

Length

562 amino acids

Sequence
(BLAST)

001: MACLAPHFKW APSSFSTTHA YQHPSSSSSS SNSGRCSGRR PFRVQCAVTS AAAAVVDADH AAGGPLHLVY SSPDSAPVLQ RNFESTLASE TVLNKEAVVT
101: AAAAEAVALA RAAAEAAQEV VHMVQKSSSQ PVFRKKGEVE NYLAKEILRT EMLSSRANEY SDGEPYGIPS DEAELDDDTQ DADNIAVKSA RQSERRARRT
201: RATMKAATIV RSSPKLAASS KKKRSKGPST MNPLGSLWKM TGRKLLTAKE EVELSNGIQD LLKLEAIQGE LAEYNGGQPT FPQWAAAAGT DENTLRKRLD
301: HGIHCKNRMV TSNVRLVISI AREFEGPGLE LYDLIQEGMQ GLIRGAEKFD ASKGFRFSTY SHWWIKQAMR KSVSEQTQIF RLPFICFNLP DSRHGSYQTA
401: HMVEASYRVK ECTKRLRRKL KRRPSNEEIA VDTGMPVKRV EAAVNLPKYS VSLDSKIGST DMTYQEVTAD PSAETAEEML NRMSMKKDVH QALDTLSPRE
501: RQVVKLRFGI DDGRIRTLQE IGNIMGVSRE RIRQIESGAF RKLRGKKKVK CLMDYLVPVG NW

Best Arabidopsis Sequence Match ( AT1G08540.1 )
(BLAST)

001: MSSCLLPQFK CPPDSFSIHF RTSFCAPKHN KGSVFFQPQC AVSTSPALLT SMLDVAKLRL PSFDTDSDSL ISDRQWTYTR PDGPSTEAKY LEALASETLL
101: TSDEAVVVAA AAEAVALARA AVKVAKDATL FKNSNNTNLL TSSTADKRSK WDQFTEKERA GILGHLAVSD NGIVSDKITA SASNKESIGD LESEKQEEVE
201: LLEEQPSVSL AVRSTRQTER KARRAKGLEK TASGIPSVKT GSSPKKKRLV AQEVDHNDPL RYLRMTTSSS KLLTVREEHE LSAGIQDLLK LERLQTELTE
301: RSGRQPTFAQ WASAAGVDQK SLRQRIHHGT LCKDKMIKSN IRLVISIAKN YQGAGMNLQD LVQEGCRGLV RGAEKFDATK GFKFSTYAHW WIKQAVRKSL
401: SDQSRMIRLP FHMVEATYRV KEARKQLYSE TGKHPKNEEI AEATGLSMKR LMAVLLSPKP PRSLDQKIGM NQNLKPSEVI ADPEAVTSED ILIKEFMRQD
501: LDKVLDSLGT REKQVIRWRF GMEDGRMKTL QEIGEMMGVS RERVRQIESS AFRKLKNKKR NNHLQQYLVA QS

Arabidopsis Description

SIGBRNA polymerase sigma factor sigB [Source:UniProtKB/Swiss-Prot;Acc:O22056]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.