Factsheet for Zm00001d049160_P002

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU83379	Sorghum	plastid	91.32	94.04
Os11t0448400-02	Rice	nucleus	64.74	84.63
HORVU4Hr1G044910.10	Barley	nucleus	69.98	81.13
TraesCS4B01G163500.1	Wheat	plastid	76.31	77.29
TraesCS4A01G157100.1	Wheat	plastid	76.31	76.59
TraesCS4D01G154500.2	Wheat	plastid	76.85	75.62
Zm00001d028585_P001	Maize	plastid	56.6	59.28
KRH51354	Soybean	nucleus	43.94	48.6
VIT_15s0024g00640.t01	Wine grape	plastid	48.82	46.96
GSMUA_Achr7P04860_001	Banana	nucleus	45.93	46.35
KRH60664	Soybean	nucleus	46.11	45.21
GSMUA_Achr7P17330_001	Banana	nucleus, plastid	44.48	44.89
CDX93555	Canola	plastid	45.21	43.63
Bra018617.1-P	Field mustard	plastid	45.03	43.46
AT1G08540.1	Thale cress	plastid	44.85	43.36
CDX97496	Canola	plastid	44.67	43.26
CDY31138	Canola	plastid	44.67	43.11
CDX95052	Canola	plastid	45.39	43.05
Bra030732.1-P	Field mustard	plastid	44.3	42.98
Solyc01g081490.2.1	Tomato	nucleus	47.56	42.9
PGSC0003DMT400079883	Potato	plastid	47.02	42.41
Zm00001d039181_P001	Maize	nucleus	25.14	24.6
Zm00001d012810_P003	Maize	plastid	18.81	24.3
Zm00001d049494_P001	Maize	plastid	21.16	23.21
Zm00001d024507_P001	Maize	plastid	18.26	22.44
Zm00001d039194_P001	Maize	plastid	18.26	20.32

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.601.10	MapMan:15.6.2.1	UniProt:A0A1D6PSU5	ProteinID:AQK49743.1	GO:GO:0001053
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0006351	GO:GO:0006352
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536
GO:GO:0009987	GO:GO:0016043	GO:GO:0016987	GO:GO:2000142	InterPro:IPR036388	PFAM:PF04539
PFAM:PF04542	PFAM:PF04545	PIRSF:PIRSF000767	PRINTS:PR00046	ScanProsite:PS00716	PANTHER:PTHR30603
PANTHER:PTHR30603:SF25	InterPro:RNA_pol_sigma-70_dom	InterPro:RNA_pol_sigma70	InterPro:RNA_pol_sigma70_r2	InterPro:RNA_pol_sigma70_r3	InterPro:RNA_pol_sigma70_r4
InterPro:RNA_pol_sigma_SigB/C/D/F	InterPro:RNA_pol_sigma_r2	InterPro:RNA_pol_sigma_r3/r4-like	SUPFAM:SSF88659	SUPFAM:SSF88946	TIGRFAMs:TIGR02937
UniParc:UPI0008426C67	InterPro:WH-like_DNA-bd_sf	EnsemblPlantsGene:Zm00001d049160	EnsemblPlants:Zm00001d049160_P002	EnsemblPlants:Zm00001d049160_T002	SEG:seg

Description

sigma factor sig2A sigma factor sig2A

Coordinates

chr4:+:18466281..18470669

Molecular Weight (calculated)

61691.0 Da

IEP (calculated)

9.875

GRAVY (calculated)

-0.417

Length

553 amino acids

Sequence
(BLAST)

001: MACLAPQFKW APSAAAHMPS SSSSSSYSRC SALRVHCAVT SAAVVEDRTN GSAAQLRLAY AAPAIQRNFE ATLASEALLN EEAVVAAAAA EAVALARAAA
101: EAAQEVVQIV QRNNHQPVIR PKKCVDNYLA NEILRTEMRS SSPDMYANNP LMEYLDSYGI MDAEDELDAY AQYTENIAVK SARQSERKAR RTRAAIKAST
201: TLHASQKVAL SSKKKRSKGS SSSMNPLGSL WKMTGRRLLT AKEEVEFSEG IQDLLKLEAI QAELIEYNGG QPTFSQWATA AGVDEKTLRK RLNYGIYCKN
301: RMVTSNVRLV ISIAREFEGP GMDFYDLIQE GMQGLIRGAE KFDSSKGFRF STYSHWWIKQ AMRKSVSEQS QIFRLPVCPP PKSCSFPDIN AHMVEASYRV
401: KECTKRLRRK LRRRPTNEEI AVDTGIPIKR VEAAVNLPKY SVSLDSKIGS TDMTYQEVTA DPSAETAEEM LNRMSMKKDV HMALDTLTTR EKQVVVLRFG
501: LEDGRIRTLQ EIGNIMGVSR ERIRQIESGA FRKLRSKKKV KALKDYLVPV GNW

Best Arabidopsis Sequence Match ( AT1G08540.1 )
(BLAST)

001: MSSCLLPQFK CPPDSFSIHF RTSFCAPKHN KGSVFFQPQC AVSTSPALLT SMLDVAKLRL PSFDTDSDSL ISDRQWTYTR PDGPSTEAKY LEALASETLL
101: TSDEAVVVAA AAEAVALARA AVKVAKDATL FKNSNNTNLL TSSTADKRSK WDQFTEKERA GILGHLAVSD NGIVSDKITA SASNKESIGD LESEKQEEVE
201: LLEEQPSVSL AVRSTRQTER KARRAKGLEK TASGIPSVKT GSSPKKKRLV AQEVDHNDPL RYLRMTTSSS KLLTVREEHE LSAGIQDLLK LERLQTELTE
301: RSGRQPTFAQ WASAAGVDQK SLRQRIHHGT LCKDKMIKSN IRLVISIAKN YQGAGMNLQD LVQEGCRGLV RGAEKFDATK GFKFSTYAHW WIKQAVRKSL
401: SDQSRMIRLP FHMVEATYRV KEARKQLYSE TGKHPKNEEI AEATGLSMKR LMAVLLSPKP PRSLDQKIGM NQNLKPSEVI ADPEAVTSED ILIKEFMRQD
501: LDKVLDSLGT REKQVIRWRF GMEDGRMKTL QEIGEMMGVS RERVRQIESS AFRKLKNKKR NNHLQQYLVA QS

Arabidopsis Description

SIGBRNA polymerase sigma factor sigB [Source:UniProtKB/Swiss-Prot;Acc:O22056]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.