Factsheet for Bra018617.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
nucleus 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX93555	Canola	plastid	98.95	98.95
Bra030732.1-P	Field mustard	plastid	86.91	87.37
AT1G08540.1	Thale cress	plastid	84.12	84.27
VIT_15s0024g00640.t01	Wine grape	plastid	65.97	65.74
KRH51354	Soybean	nucleus	56.54	64.8
KRH60664	Soybean	nucleus	59.69	60.64
GSMUA_Achr7P04860_001	Banana	nucleus	57.42	60.04
PGSC0003DMT400079883	Potato	plastid	61.26	57.26
GSMUA_Achr7P17330_001	Banana	nucleus, plastid	54.62	57.12
Solyc01g081490.2.1	Tomato	nucleus	61.08	57.1
Os11t0448400-02	Rice	nucleus	37.7	51.06
HORVU4Hr1G045100.1	Barley	nucleus	8.9	48.57
HORVU4Hr1G044910.10	Barley	nucleus	40.31	48.43
OQU83379	Sorghum	plastid	43.11	46.0
Zm00001d049160_P002	Maize	plastid	43.46	45.03
TraesCS4B01G163500.1	Wheat	plastid	42.76	44.87
TraesCS4A01G157100.1	Wheat	plastid	43.11	44.83
TraesCS4D01G154500.2	Wheat	plastid	43.11	43.95
EER95113	Sorghum	plastid	40.31	43.75
HORVU4Hr1G060200.1	Barley	plastid	41.36	43.25
Zm00001d028585_P001	Maize	plastid	39.62	42.99
Os03t0271100-01	Rice	mitochondrion	40.31	42.78
TraesCS4B01G209300.1	Wheat	plastid	40.66	42.6
TraesCS4A01G095200.1	Wheat	plastid	40.66	42.52
TraesCS4D01G210000.1	Wheat	plastid	40.49	42.34
Bra017213.1-P	Field mustard	plastid	28.62	30.77
Bra008807.1-P	Field mustard	plastid	19.37	27.34
Bra008513.1-P	Field mustard	nucleus	21.47	25.0
Bra014857.1-P	Field mustard	nucleus, plastid	23.04	24.13
Bra026466.1-P	Field mustard	nucleus	19.72	23.25
Bra009735.1-P	Field mustard	plastid	20.24	22.75
Bra023430.1-P	Field mustard	plastid	18.15	14.31

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.601.10	MapMan:15.6.2.1	EnsemblPlantsGene:Bra018617	EnsemblPlants:Bra018617.1	EnsemblPlants:Bra018617.1-P
ncoils:Coil	GO:GO:0001053	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139
GO:GO:0006351	GO:GO:0006352	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0016043	GO:GO:0016987	GO:GO:2000142
InterPro:IPR036388	UniProt:M4DQ26	PFAM:PF04539	PFAM:PF04542	PFAM:PF04545	PIRSF:PIRSF000767
PRINTS:PR00046	ScanProsite:PS00716	PANTHER:PTHR30603	PANTHER:PTHR30603:SF25	InterPro:RNA_pol_sigma-70_dom	InterPro:RNA_pol_sigma70
InterPro:RNA_pol_sigma70_r2	InterPro:RNA_pol_sigma70_r3	InterPro:RNA_pol_sigma70_r4	InterPro:RNA_pol_sigma_SigB/C/D/F	InterPro:RNA_pol_sigma_r2	InterPro:RNA_pol_sigma_r3/r4-like
SUPFAM:SSF88659	SUPFAM:SSF88946	TIGRFAMs:TIGR02937	UniParc:UPI000253E798	InterPro:WH-like_DNA-bd_sf	SEG:seg

Description

AT1G08540 (E=8e-238) SIGB, SIG1, SIG2, SIGA, ATSIG1, ABC1, ATSIG2 | SIG2 (RNA POLYMERASE SIGMA SUBUNIT 2); DNA binding / DNA-directed RNA polymerase/ sigma factor/ transcription factor

Coordinates

chrA06:+:2949410..2953437

Molecular Weight (calculated)

64095.4 Da

IEP (calculated)

9.892

GRAVY (calculated)

-0.622

Length

573 amino acids

Sequence
(BLAST)

001: MSSCLLPNFK CQPDSFSIHF RTSYSLSKHN KSSVYFQPQC AVSTSPPLLT STLDVSKLRL PSFDTDSDRP WTYTGAVGPS TEAKYLEALA SETLLTSDEA
101: VVAAAAAEAL ALARAALKVA KDATLFSNTH NAKPSVTSSA PDKRSKWDQF TEKERAGILG HLAVSDTGVV SDRVTAPAPP ECNKESAEKQ EAEPLEEEEE
201: EIVAVSSAVR STRQTERKAR RAKGLEKTAS GMQSAVKTVS SSRKKRVASQ EIDNNDPLRY LRMTTSSSKL LTAREEQQLS EGIQDLLKLE RLQAELTERC
301: GHQPTLAQWA SAAGIDKKTL RKRITHGTQC KDRMIKSNIR LVISIAKNYQ GAGMDFQDLV QEGCRGLVRG AEKFDATKGF KFSTYAHWWI KQAVRKSLSD
401: QSRMIRLPFH MVEATYRVKE ARKQLYSETG KQPKNEEVAE ATGLSMKRLM AVLLSPKPPR SLDQKIGINL NLKPSEVISD PEAETSEDIL MKQFMREDLD
501: KVLDSLGTRE KQVIRWRFGM EDGRMKTLQE IGETMGVSRE RVRQIESSAF RKLKNKKRNN HLQQYLVAQT KES

Best Arabidopsis Sequence Match ( AT1G08540.1 )
(BLAST)

001: MSSCLLPQFK CPPDSFSIHF RTSFCAPKHN KGSVFFQPQC AVSTSPALLT SMLDVAKLRL PSFDTDSDSL ISDRQWTYTR PDGPSTEAKY LEALASETLL
101: TSDEAVVVAA AAEAVALARA AVKVAKDATL FKNSNNTNLL TSSTADKRSK WDQFTEKERA GILGHLAVSD NGIVSDKITA SASNKESIGD LESEKQEEVE
201: LLEEQPSVSL AVRSTRQTER KARRAKGLEK TASGIPSVKT GSSPKKKRLV AQEVDHNDPL RYLRMTTSSS KLLTVREEHE LSAGIQDLLK LERLQTELTE
301: RSGRQPTFAQ WASAAGVDQK SLRQRIHHGT LCKDKMIKSN IRLVISIAKN YQGAGMNLQD LVQEGCRGLV RGAEKFDATK GFKFSTYAHW WIKQAVRKSL
401: SDQSRMIRLP FHMVEATYRV KEARKQLYSE TGKHPKNEEI AEATGLSMKR LMAVLLSPKP PRSLDQKIGM NQNLKPSEVI ADPEAVTSED ILIKEFMRQD
501: LDKVLDSLGT REKQVIRWRF GMEDGRMKTL QEIGEMMGVS RERVRQIESS AFRKLKNKKR NNHLQQYLVA QS

Arabidopsis Description

SIGBRNA polymerase sigma factor sigB [Source:UniProtKB/Swiss-Prot;Acc:O22056]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.