Factsheet for TraesCS4D01G210000.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G209300.1	Wheat	plastid	98.18	98.35
TraesCS4A01G095200.1	Wheat	plastid	97.63	97.63
HORVU4Hr1G060200.1	Barley	plastid	95.8	95.8
Os03t0271100-01	Rice	mitochondrion	77.55	78.7
EER95113	Sorghum	plastid	72.26	75.0
Zm00001d028585_P001	Maize	plastid	71.35	74.05
TraesCS4D01G154500.2	Wheat	plastid	62.04	60.5
KRH51354	Soybean	nucleus	40.15	44.0
VIT_15s0024g00640.t01	Wine grape	plastid	43.8	41.74
GSMUA_Achr7P17330_001	Banana	nucleus, plastid	41.61	41.61
KRH60664	Soybean	nucleus	42.7	41.49
Bra030732.1-P	Field mustard	plastid	42.52	40.88
CDY31138	Canola	plastid	42.7	40.84
CDX97496	Canola	plastid	42.52	40.81
GSMUA_Achr7P04860_001	Banana	nucleus	40.69	40.69
CDX93555	Canola	plastid	42.34	40.49
Bra018617.1-P	Field mustard	plastid	42.34	40.49
AT1G08540.1	Thale cress	plastid	42.15	40.38
CDX95052	Canola	plastid	42.34	39.79
Solyc01g081490.2.1	Tomato	nucleus	42.88	38.34
PGSC0003DMT400079883	Potato	plastid	42.34	37.85
TraesCS5D01G551200.1	Wheat	plastid	25.91	25.4
TraesCS7D01G292000.1	Wheat	plastid	21.72	23.29
TraesCS1D01G440900.1	Wheat	plastid	24.09	22.84
TraesCS1D01G436500.1	Wheat	plastid	19.16	21.26

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.601.10	MapMan:15.6.2.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003700
GO:GO:0006139	GO:GO:0006352	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	InterPro:IPR036388	PFAM:PF04539	PFAM:PF04542	PFAM:PF04545	PIRSF:PIRSF000767
PRINTS:PR00046	ScanProsite:PS00716	PANTHER:PTHR30603	PANTHER:PTHR30603:SF25	InterPro:RNA_pol_sigma-70_dom	InterPro:RNA_pol_sigma70
InterPro:RNA_pol_sigma70_r2	InterPro:RNA_pol_sigma70_r3	InterPro:RNA_pol_sigma70_r4	InterPro:RNA_pol_sigma_SigB/C/D/F	InterPro:RNA_pol_sigma_r2	InterPro:RNA_pol_sigma_r3/r4-like
SUPFAM:SSF88659	SUPFAM:SSF88946	TIGRFAMs:TIGR02937	EnsemblPlantsGene:TraesCS4D01G210000	EnsemblPlants:TraesCS4D01G210000.1	InterPro:WH-like_DNA-bd_sf
TIGR:cd06171	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr4D:-:361360496..361363351

Molecular Weight (calculated)

60449.2 Da

IEP (calculated)

9.795

GRAVY (calculated)

-0.487

Length

548 amino acids

Sequence
(BLAST)

001: MSSCLAPQFK WPPSTRAAVP REPGGGGCAA GGSCRPGRVQ CALSSAAVVE AERMESLAAG ARRLAYGGAV DVGPPPPSDN TSLPGGFGEA LLNQEAVVTA
101: AAAEAVALAR AAAEVAREVA RMVQTDHRPD VGDSHDLVED SYLTREVLRT EVRAGSRYAE ARLLDDAGFV SIFSDESESD DDEQGARGVA VKSARQPERR
201: ARRVRAAMKA AKSFSDRRPV TASSRKKRVK GCRNSLGCFY KMSGRKLLTA KQEVELSQGI QDLLKLEAVQ KEVAHYNGGE PTFGQWAAAA GTDENTLRKR
301: LSHGIYCKNM MVKSNVRLVI SIAKEFEGPG TEFSDLIQEG IQGLIRGAEK FDASKGFRFS TYSHWWIKQA IRKSVLEQTQ IIRLPAHMAE ASSRLKECRR
401: RLRRQLNRLP TNEEIALDTG MTARRVEAAM CLPRYSVSLT GKVGCTDVTY QEITADKSTE TAEETLHRLF MKKDVDKALD SLTPREREVI RYRFGMDDGK
501: ARTLHDIGQL LGVSRERIRQ IEMAAFRKLR SKKKVTSLQH YLEPAESW

Best Arabidopsis Sequence Match ( AT1G08540.1 )
(BLAST)

001: MSSCLLPQFK CPPDSFSIHF RTSFCAPKHN KGSVFFQPQC AVSTSPALLT SMLDVAKLRL PSFDTDSDSL ISDRQWTYTR PDGPSTEAKY LEALASETLL
101: TSDEAVVVAA AAEAVALARA AVKVAKDATL FKNSNNTNLL TSSTADKRSK WDQFTEKERA GILGHLAVSD NGIVSDKITA SASNKESIGD LESEKQEEVE
201: LLEEQPSVSL AVRSTRQTER KARRAKGLEK TASGIPSVKT GSSPKKKRLV AQEVDHNDPL RYLRMTTSSS KLLTVREEHE LSAGIQDLLK LERLQTELTE
301: RSGRQPTFAQ WASAAGVDQK SLRQRIHHGT LCKDKMIKSN IRLVISIAKN YQGAGMNLQD LVQEGCRGLV RGAEKFDATK GFKFSTYAHW WIKQAVRKSL
401: SDQSRMIRLP FHMVEATYRV KEARKQLYSE TGKHPKNEEI AEATGLSMKR LMAVLLSPKP PRSLDQKIGM NQNLKPSEVI ADPEAVTSED ILIKEFMRQD
501: LDKVLDSLGT REKQVIRWRF GMEDGRMKTL QEIGEMMGVS RERVRQIESS AFRKLKNKKR NNHLQQYLVA QS

Arabidopsis Description

SIGBRNA polymerase sigma factor sigB [Source:UniProtKB/Swiss-Prot;Acc:O22056]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.