Factsheet for GSMUA_Achr7P04860_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P17330_001	Banana	nucleus, plastid	70.26	70.26
KRH51354	Soybean	nucleus	59.85	65.6
VIT_15s0024g00640.t01	Wine grape	plastid	67.7	64.52
KRH60664	Soybean	nucleus	61.13	59.4
Bra018617.1-P	Field mustard	plastid	60.04	57.42
CDX93555	Canola	plastid	59.85	57.24
CDY31138	Canola	plastid	59.85	57.24
Bra030732.1-P	Field mustard	plastid	59.49	57.19
AT1G08540.1	Thale cress	plastid	59.67	57.17
Solyc01g081490.2.1	Tomato	nucleus	63.69	56.93
CDX97496	Canola	plastid	59.31	56.92
PGSC0003DMT400079883	Potato	plastid	63.14	56.44
CDX95052	Canola	plastid	59.31	55.75
Os11t0448400-02	Rice	nucleus	40.69	52.72
HORVU4Hr1G044910.10	Barley	nucleus	44.71	51.36
HORVU4Hr1G045100.1	Barley	nucleus	9.67	50.48
OQU83379	Sorghum	plastid	47.63	48.6
TraesCS4B01G163500.1	Wheat	plastid	46.35	46.52
Zm00001d049160_P002	Maize	plastid	46.35	45.93
TraesCS4A01G157100.1	Wheat	plastid	46.17	45.92
TraesCS4D01G154500.2	Wheat	plastid	45.99	44.84
EER95113	Sorghum	plastid	41.97	43.56
Zm00001d028585_P001	Maize	plastid	41.06	42.61
Os03t0271100-01	Rice	mitochondrion	41.24	41.85
TraesCS4B01G209300.1	Wheat	plastid	40.88	40.95
HORVU4Hr1G060200.1	Barley	plastid	40.88	40.88
TraesCS4A01G095200.1	Wheat	plastid	40.88	40.88
TraesCS4D01G210000.1	Wheat	plastid	40.69	40.69
GSMUA_Achr4P30300_001	Banana	nucleus	13.14	35.82
GSMUA_Achr1P10700_001	Banana	nucleus	21.17	27.42
GSMUA_Achr11P...	Banana	nucleus	22.08	26.36
GSMUA_Achr4P18530_001	Banana	plastid	21.72	25.43
GSMUA_Achr4P01060_001	Banana	golgi, mitochondrion, nucleus, plastid	26.28	25.26
GSMUA_Achr11P...	Banana	nucleus	25.73	24.35
GSMUA_Achr7P24590_001	Banana	plastid	19.34	20.99

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.601.10	MapMan:15.6.2.1	GO:GO:0001053	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006139	GO:GO:0006351	GO:GO:0006352	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0016043
GO:GO:0016987	GO:GO:2000142	EnsemblPlantsGene:GSMUA_Achr7G04860_001	EnsemblPlants:GSMUA_Achr7P04860_001	EnsemblPlants:GSMUA_Achr7T04860_001	InterPro:IPR036388
UniProt:M0TES6	PFAM:PF04539	PFAM:PF04542	PFAM:PF04545	PIRSF:PIRSF000767	PRINTS:PR00046
ScanProsite:PS00716	PANTHER:PTHR30603	PANTHER:PTHR30603:SF25	InterPro:RNA_pol_sigma-70_dom	InterPro:RNA_pol_sigma70	InterPro:RNA_pol_sigma70_r2
InterPro:RNA_pol_sigma70_r3	InterPro:RNA_pol_sigma70_r4	InterPro:RNA_pol_sigma_SigB/C/D/F	InterPro:RNA_pol_sigma_r2	InterPro:RNA_pol_sigma_r3/r4-like	SUPFAM:SSF88659
SUPFAM:SSF88946	TIGRFAMs:TIGR02937	UniParc:UPI00029482CC	InterPro:WH-like_DNA-bd_sf	SEG:seg	:

Description

Putative RNA polymerase sigma factor rpoD [Source:GMGC_GENE;Acc:GSMUA_Achr7G04860_001]

Coordinates

chr7:+:3654801..3658184

Molecular Weight (calculated)

61505.5 Da

IEP (calculated)

9.499

GRAVY (calculated)

-0.470

Length

548 amino acids

Sequence
(BLAST)

001: MGLCEYYFTI LSSKARESVW SQVRCVLSPK TALIDFEQIP KLEARSTSLS TCAIKPLTYT GAVGLPTKTS FEATWASEAL LTNEEAVIAA AAAEAVALAR
101: AALELAKDAA QMIRKSPSAE VENVNLSKTE WTGMTNHSVA TETTSLEDSV TLDESVRKDI SSSTYNETEV EETEYCGNIA VRSGRQTERR ARRARAAEKA
201: AAGVLNLKSG SSGKKKRSTL QEIDYSDPLH YLRGTTSTSR LLTAAEEVEL SEGIQTYSKI LFNGDLLKLE RLQQDLTERN GCQPTFAQWA AAAGIDQKVL
301: RKRLNYGTFC KDKMITSNIR LVISIAKNYQ HAGMNLQDLV QEGCRGLIKG AEKFDASKGF KFSTYAHWWI KQAVRKSLSE QSRTIRLPFH MVEATYRVRE
401: AKKQLYSENG RHPDHEEVAE ASGLSMKRFA AVMLTPKAPR SLDQKIGINQ TLKPSEVIAD PDAETSEDIL IKQFMREDLN KVLDTLNPRE KRVVRWRFGL
501: EDGRMKTLQE IGELMGVSRE RIRQIEFCAF RKLKSKKRTK NLQQYIIS

Best Arabidopsis Sequence Match ( AT1G08540.1 )
(BLAST)

001: MSSCLLPQFK CPPDSFSIHF RTSFCAPKHN KGSVFFQPQC AVSTSPALLT SMLDVAKLRL PSFDTDSDSL ISDRQWTYTR PDGPSTEAKY LEALASETLL
101: TSDEAVVVAA AAEAVALARA AVKVAKDATL FKNSNNTNLL TSSTADKRSK WDQFTEKERA GILGHLAVSD NGIVSDKITA SASNKESIGD LESEKQEEVE
201: LLEEQPSVSL AVRSTRQTER KARRAKGLEK TASGIPSVKT GSSPKKKRLV AQEVDHNDPL RYLRMTTSSS KLLTVREEHE LSAGIQDLLK LERLQTELTE
301: RSGRQPTFAQ WASAAGVDQK SLRQRIHHGT LCKDKMIKSN IRLVISIAKN YQGAGMNLQD LVQEGCRGLV RGAEKFDATK GFKFSTYAHW WIKQAVRKSL
401: SDQSRMIRLP FHMVEATYRV KEARKQLYSE TGKHPKNEEI AEATGLSMKR LMAVLLSPKP PRSLDQKIGM NQNLKPSEVI ADPEAVTSED ILIKEFMRQD
501: LDKVLDSLGT REKQVIRWRF GMEDGRMKTL QEIGEMMGVS RERVRQIESS AFRKLKNKKR NNHLQQYLVA QS

Arabidopsis Description

SIGBRNA polymerase sigma factor sigB [Source:UniProtKB/Swiss-Prot;Acc:O22056]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.