Factsheet for TraesCS4B01G163500.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G157100.1	Wheat	plastid	97.07	96.19
TraesCS4D01G154500.2	Wheat	plastid	98.9	96.09
HORVU4Hr1G044910.10	Barley	nucleus	83.33	95.39
Os11t0448400-02	Rice	nucleus	65.02	83.92
OQU83379	Sorghum	plastid	76.92	78.21
Zm00001d049160_P002	Maize	plastid	77.29	76.31
TraesCS4B01G209300.1	Wheat	plastid	61.54	61.43
KRH51354	Soybean	nucleus	43.77	47.8
GSMUA_Achr7P04860_001	Banana	nucleus	46.52	46.35
GSMUA_Achr7P17330_001	Banana	nucleus, plastid	45.97	45.8
KRH60664	Soybean	nucleus	47.07	45.57
VIT_15s0024g00640.t01	Wine grape	plastid	46.89	44.52
Bra030732.1-P	Field mustard	plastid	45.24	43.33
CDY31138	Canola	plastid	45.42	43.28
AT1G08540.1	Thale cress	plastid	45.05	43.01
CDX97496	Canola	plastid	44.87	42.91
CDX93555	Canola	plastid	44.87	42.76
Bra018617.1-P	Field mustard	plastid	44.87	42.76
CDX95052	Canola	plastid	44.87	42.02
Solyc01g081490.2.1	Tomato	nucleus	47.07	41.92
PGSC0003DMT400079883	Potato	plastid	46.7	41.6
TraesCS5B01G563800.2	Wheat	plastid	25.64	24.87
TraesCS1B01G467100.1	Wheat	plastid	25.64	24.6
TraesCS7B01G184800.1	Wheat	nucleus, plastid	21.43	22.9
TraesCS1B01G461600.1	Wheat	plastid	17.95	19.92

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.601.10	MapMan:15.6.2.1	GO:GO:0003674	GO:GO:0003700	GO:GO:0006139
GO:GO:0006352	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR036388	PFAM:PF04539	PFAM:PF04542	PFAM:PF04545	PIRSF:PIRSF000767	PRINTS:PR00046
ScanProsite:PS00716	PANTHER:PTHR30603	PANTHER:PTHR30603:SF25	InterPro:RNA_pol_sigma-70_dom	InterPro:RNA_pol_sigma70	InterPro:RNA_pol_sigma70_r2
InterPro:RNA_pol_sigma70_r3	InterPro:RNA_pol_sigma70_r4	InterPro:RNA_pol_sigma_SigB/C/D/F	InterPro:RNA_pol_sigma_r2	InterPro:RNA_pol_sigma_r3/r4-like	SUPFAM:SSF88659
SUPFAM:SSF88946	TIGRFAMs:TIGR02937	EnsemblPlantsGene:TraesCS4B01G163500	EnsemblPlants:TraesCS4B01G163500.1	InterPro:WH-like_DNA-bd_sf	TIGR:cd06171
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr4B:+:334077136..334105923

Molecular Weight (calculated)

60491.2 Da

IEP (calculated)

10.125

GRAVY (calculated)

-0.513

Length

546 amino acids

Sequence
(BLAST)

001: MACLAPHFKW APSSFSTTHA YQHPSSSSSS SNSARCSGRR TIRVQCAVTS AAAAVVDADH AASGPLHIVY SSPDSAPVLQ RNFESTLASE TVLNKEAVVT
101: AAAAEAVALA RAAAEAAQKV VHMVQKSSSQ PVFRKKGEVE NYLAKEILRT EMLSSRANEY SDGEPYGIPS DEAELDDDTQ DADNIAVKSA RQSERRARRT
201: RATMKAATIV RSSPKLAASS KKKRSKGPST MNPLGSLWKM TGRKLLTAKE EVELSNGIQD LLKLEAIQGE LAEYNGGQPT FPQWAAAAGT DENTLRKRLD
301: HGIHCKNRMV TSNVRLVISI AREFEGPGLE LYDLIQEGMQ GLIRGAEKFD ASKGFRFSTY SHWWIKQAMR KSVSEQTQIF RLPAHMVEAS YRVKECTKRL
401: RRKLKRRPSN EEIAVDTGMP VKRVEAAVNL PKYSVSLDSK IGSTDMTYQE VTADPSAETA EEMLNRMSMK KDVHQALDTL SPRERQVVKL RFGIDDGRIR
501: TLQEIGNIMG VSRERIRQIE SGAFRKLRGK KKVKCLMDYL VPVGNW

Best Arabidopsis Sequence Match ( AT1G08540.1 )
(BLAST)

001: MSSCLLPQFK CPPDSFSIHF RTSFCAPKHN KGSVFFQPQC AVSTSPALLT SMLDVAKLRL PSFDTDSDSL ISDRQWTYTR PDGPSTEAKY LEALASETLL
101: TSDEAVVVAA AAEAVALARA AVKVAKDATL FKNSNNTNLL TSSTADKRSK WDQFTEKERA GILGHLAVSD NGIVSDKITA SASNKESIGD LESEKQEEVE
201: LLEEQPSVSL AVRSTRQTER KARRAKGLEK TASGIPSVKT GSSPKKKRLV AQEVDHNDPL RYLRMTTSSS KLLTVREEHE LSAGIQDLLK LERLQTELTE
301: RSGRQPTFAQ WASAAGVDQK SLRQRIHHGT LCKDKMIKSN IRLVISIAKN YQGAGMNLQD LVQEGCRGLV RGAEKFDATK GFKFSTYAHW WIKQAVRKSL
401: SDQSRMIRLP FHMVEATYRV KEARKQLYSE TGKHPKNEEI AEATGLSMKR LMAVLLSPKP PRSLDQKIGM NQNLKPSEVI ADPEAVTSED ILIKEFMRQD
501: LDKVLDSLGT REKQVIRWRF GMEDGRMKTL QEIGEMMGVS RERVRQIESS AFRKLKNKKR NNHLQQYLVA QS

Arabidopsis Description

SIGBRNA polymerase sigma factor sigB [Source:UniProtKB/Swiss-Prot;Acc:O22056]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.