CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY31138	Canola	plastid	97.02	96.68
Bra030732.1-P	Field mustard	plastid	95.97	96.14
CDX93555	Canola	plastid	88.27	87.96
CDX95052	Canola	plastid	89.14	87.31
AT1G08540.1	Thale cress	plastid	85.64	85.49
VIT_15s0024g00640.t01	Wine grape	plastid	67.25	66.78
KRH51354	Soybean	nucleus	57.09	65.2
KRH60664	Soybean	nucleus	59.89	60.64
GSMUA_Achr7P04860_001	Banana	nucleus	56.92	59.31
GSMUA_Achr7P17330_001	Banana	nucleus, plastid	55.69	58.03
PGSC0003DMT400079883	Potato	plastid	62.0	57.75
Solyc01g081490.2.1	Tomato	nucleus	62.0	57.75
Os11t0448400-02	Rice	nucleus	37.65	50.83
HORVU4Hr1G045100.1	Barley	nucleus	9.28	50.48
HORVU4Hr1G044910.10	Barley	nucleus	39.93	47.8
OQU83379	Sorghum	plastid	43.08	45.81
TraesCS4B01G163500.1	Wheat	plastid	42.91	44.87
TraesCS4A01G157100.1	Wheat	plastid	43.26	44.83
Zm00001d049160_P002	Maize	plastid	43.26	44.67
TraesCS4D01G154500.2	Wheat	plastid	43.26	43.95
EER95113	Sorghum	plastid	40.46	43.75
Zm00001d028585_P001	Maize	plastid	39.93	43.18
HORVU4Hr1G060200.1	Barley	plastid	41.33	43.07
TraesCS4B01G209300.1	Wheat	plastid	40.98	42.78
Os03t0271100-01	Rice	mitochondrion	40.46	42.78
TraesCS4A01G095200.1	Wheat	plastid	40.98	42.7
TraesCS4D01G210000.1	Wheat	plastid	40.81	42.52
CDY66142	Canola	nucleus	22.07	37.28
CDY18468	Canola	plastid	28.2	29.6
CDX79708	Canola	endoplasmic reticulum, extracellular	7.71	29.53
CDX91100	Canola	plastid	19.44	27.14
CDX85630	Canola	plastid	19.26	26.96
CDY09826	Canola	plastid	19.61	26.73
CDY52962	Canola	nucleus	20.84	24.79
CDY56127	Canola	nucleus	21.19	24.64
CDX87140	Canola	plastid	20.84	23.66
CDY19846	Canola	nucleus	20.14	23.57
CDX80416	Canola	nucleus	20.14	20.5
CDX88078	Canola	cytosol, mitochondrion, nucleus, vacuole	20.14	19.59
CDX76185	Canola	plastid	22.59	19.25
CDY13153	Canola	plastid	21.89	18.6
CDY59157	Canola	cytosol	0.18	1.22
CDX73516	Canola	cytosol	0.18	1.22
CDY54028	Canola	cytosol	0.18	1.22
CDX67575	Canola	cytosol	0.18	1.22

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.601.10	MapMan:15.6.2.1	GO:A0A078E8G8	EnsemblPlants:CDX97496	ProteinID:CDX97496
ProteinID:CDX97496.1	GO:GO:0003674	GO:GO:0003700	GO:GO:0006139	GO:GO:0006352	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00104699001	InterPro:IPR036388
PFAM:PF04539	PFAM:PF04542	PFAM:PF04545	PIRSF:PIRSF000767	PRINTS:PR00046	ScanProsite:PS00716
PANTHER:PTHR30603	PANTHER:PTHR30603:SF25	InterPro:RNA_pol_sigma-70_dom	InterPro:RNA_pol_sigma70	InterPro:RNA_pol_sigma70_r2	InterPro:RNA_pol_sigma70_r3
InterPro:RNA_pol_sigma70_r4	InterPro:RNA_pol_sigma_SigB/C/D/F	InterPro:RNA_pol_sigma_r2	InterPro:RNA_pol_sigma_r3/r4-like	SUPFAM:SSF88659	SUPFAM:SSF88946
TIGRFAMs:TIGR02937	UniParc:UPI0004EEBC8C	InterPro:WH-like_DNA-bd_sf	SEG:seg	:	:

Description

BnaC08g13610D

Coordinates

chrLK031899:+:1298256..1300984

Molecular Weight (calculated)

63950.3 Da

IEP (calculated)

9.986

GRAVY (calculated)

-0.584

Length

571 amino acids

Sequence
(BLAST)

001: MSSCLLPQFK CPPDSFSIQF RTSHSVSKHN KGSVFFQPQC AVSTSPPLLT SVLDVAKIRL PSFDTDSNPR VSDRQWTYTG TIGPSTEAKY LEAETLLTSD
101: ESVVAAAAAE AVALARAAVK VAKDATLFRN SYNTKVLVSS TAAGEKRSKW DQFTEKERAG ILGHLAVSDT GVVSDRIISP PAPDCNKESS HDLESDKKEV
201: DVEEVSVSSA VRSTRQTERK ARRAKGLEKT ASCMQSSVKT SSSSRKKRVA SQEIDHNDPL RYLRMTTSSS KLLTAREETE LSEGIQDLLK LERLQAELTE
301: RCGHQPTFGQ WASAAGVDQK TLRKRINHGT QCKDRMIKSN IRLVISIAKN YQGAGMNLQD LVQEGCRGLV RGAEKFDATK GFKFSTYAHW WIKQAVRKSL
401: SDQSRMIRLP FHMVEATYRV KEARKQLYSE TGQQPKNEEV AEATGLSMKR LMAVLLAPKP PRSLDQKIGI NLNLKPSEVI SDPEAETSED ILIKQFMRED
501: LDKVLDSLST REKQVIRWRF GMEDGRMKTL QEIGETMGVS RERVRQIESS AFRKLKNKKI NNHLQQYLVS Q

Best Arabidopsis Sequence Match ( AT1G08540.1 )
(BLAST)

001: MSSCLLPQFK CPPDSFSIHF RTSFCAPKHN KGSVFFQPQC AVSTSPALLT SMLDVAKLRL PSFDTDSDSL ISDRQWTYTR PDGPSTEAKY LEALASETLL
101: TSDEAVVVAA AAEAVALARA AVKVAKDATL FKNSNNTNLL TSSTADKRSK WDQFTEKERA GILGHLAVSD NGIVSDKITA SASNKESIGD LESEKQEEVE
201: LLEEQPSVSL AVRSTRQTER KARRAKGLEK TASGIPSVKT GSSPKKKRLV AQEVDHNDPL RYLRMTTSSS KLLTVREEHE LSAGIQDLLK LERLQTELTE
301: RSGRQPTFAQ WASAAGVDQK SLRQRIHHGT LCKDKMIKSN IRLVISIAKN YQGAGMNLQD LVQEGCRGLV RGAEKFDATK GFKFSTYAHW WIKQAVRKSL
401: SDQSRMIRLP FHMVEATYRV KEARKQLYSE TGKHPKNEEI AEATGLSMKR LMAVLLSPKP PRSLDQKIGM NQNLKPSEVI ADPEAVTSED ILIKEFMRQD
501: LDKVLDSLGT REKQVIRWRF GMEDGRMKTL QEIGEMMGVS RERVRQIESS AFRKLKNKKR NNHLQQYLVA QS

Arabidopsis Description

SIGBRNA polymerase sigma factor sigB [Source:UniProtKB/Swiss-Prot;Acc:O22056]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.