CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra018617.1-P	Field mustard	plastid	98.95	98.95
CDX95052	Canola	plastid	94.94	93.31
CDY31138	Canola	plastid	89.01	89.01
CDX97496	Canola	plastid	87.96	88.27
AT1G08540.1	Thale cress	plastid	84.64	84.79
VIT_15s0024g00640.t01	Wine grape	plastid	66.49	66.26
KRH51354	Soybean	nucleus	56.54	64.8
KRH60664	Soybean	nucleus	59.69	60.64
GSMUA_Achr7P04860_001	Banana	nucleus	57.24	59.85
Solyc01g081490.2.1	Tomato	nucleus	61.43	57.42
PGSC0003DMT400079883	Potato	plastid	61.43	57.42
GSMUA_Achr7P17330_001	Banana	nucleus, plastid	54.45	56.93
Os11t0448400-02	Rice	nucleus	37.7	51.06
HORVU4Hr1G045100.1	Barley	nucleus	8.9	48.57
HORVU4Hr1G044910.10	Barley	nucleus	40.14	48.22
OQU83379	Sorghum	plastid	43.28	46.18
Zm00001d049160_P002	Maize	plastid	43.63	45.21
TraesCS4B01G163500.1	Wheat	plastid	42.76	44.87
TraesCS4A01G157100.1	Wheat	plastid	43.11	44.83
TraesCS4D01G154500.2	Wheat	plastid	43.11	43.95
EER95113	Sorghum	plastid	40.49	43.94
HORVU4Hr1G060200.1	Barley	plastid	41.36	43.25
Zm00001d028585_P001	Maize	plastid	39.79	43.18
TraesCS4B01G209300.1	Wheat	plastid	40.66	42.6
Os03t0271100-01	Rice	mitochondrion	40.14	42.59
TraesCS4A01G095200.1	Wheat	plastid	40.66	42.52
TraesCS4D01G210000.1	Wheat	plastid	40.49	42.34
CDY66142	Canola	nucleus	22.16	37.57
CDY18468	Canola	plastid	28.45	29.96
CDX79708	Canola	endoplasmic reticulum, extracellular	7.5	28.86
CDX91100	Canola	plastid	19.2	26.89
CDX85630	Canola	plastid	19.02	26.72
CDY09826	Canola	plastid	19.37	26.49
CDY52962	Canola	nucleus	21.29	25.42
CDY56127	Canola	nucleus	21.47	25.05
CDY19846	Canola	nucleus	20.07	23.57
CDX87140	Canola	plastid	20.59	23.46
CDX80416	Canola	nucleus	20.07	20.5
CDX76185	Canola	plastid	23.56	20.15
CDX88078	Canola	cytosol, mitochondrion, nucleus, vacuole	20.07	19.59
CDY13153	Canola	plastid	22.86	19.49
CDY59157	Canola	cytosol	0.35	2.44
CDY54028	Canola	cytosol	0.35	2.44
CDX73516	Canola	cytosol	0.35	2.44
CDX67575	Canola	cytosol	0.35	2.44

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.601.10	MapMan:15.6.2.1	GO:A0A078DW64	EnsemblPlants:CDX93555	ProteinID:CDX93555
ProteinID:CDX93555.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003700	GO:GO:0006139	GO:GO:0006352
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00156231001
InterPro:IPR036388	PFAM:PF04539	PFAM:PF04542	PFAM:PF04545	PIRSF:PIRSF000767	PRINTS:PR00046
ScanProsite:PS00716	PANTHER:PTHR30603	PANTHER:PTHR30603:SF25	InterPro:RNA_pol_sigma-70_dom	InterPro:RNA_pol_sigma70	InterPro:RNA_pol_sigma70_r2
InterPro:RNA_pol_sigma70_r3	InterPro:RNA_pol_sigma70_r4	InterPro:RNA_pol_sigma_SigB/C/D/F	InterPro:RNA_pol_sigma_r2	InterPro:RNA_pol_sigma_r3/r4-like	SUPFAM:SSF88659
SUPFAM:SSF88946	TIGRFAMs:TIGR02937	UniParc:UPI0004EED7C3	InterPro:WH-like_DNA-bd_sf	SEG:seg	:

Description

BnaA06g04930D

Coordinates

chrLK031876:-:697509..700603

Molecular Weight (calculated)

64170.4 Da

IEP (calculated)

9.892

GRAVY (calculated)

-0.648

Length

573 amino acids

Sequence
(BLAST)

001: MSSCLLPQFK CQPDSFSIHF RTSYSLSKHN KSSVYFQPQC AVSTSPPLLT STLDVSKLRL PSFDTDSDRP WTYTGTVGPS TEAKYLEALA SETLLTSDEA
101: VVAAAAAEAL ALARAALKVA KDATLFSNTH NTKPSVTSSA PDKRSKWDQF TEKERAGILG HLAVSDTGVV SDRVTAPAPP ECNKESAEKQ EAEPLEEEEE
201: EIVAVSSAVR STRQTERKAR RAKGLEKTAS GMQSSVKTGS NSRKKRVASQ EIDNNDPLRY LRMTTSSSKL LTAREEQQLS EGIQDLLKLE RLQAELTERC
301: GHQPTLAQWA SAAGIDKKTL RKRITHGTQC KDRMIKSNIR LVISIAKNYQ GAGMDFQDLV QEGCRGLVRG AEKFDATKGF KFSTYAHWWI KQAVRKSLSD
401: QSRMIRLPFH MVEATYRVKE ARKQLYSETG KQPKNEEVAE ATGLSMKRLM AVLLSPKPPR SLDQKIGINL NLKPSEVISD PEAETSEDIL MKQFMREDLD
501: KVLDSLGTRE KQVIRWRFGM EDGRMKTLQE IGETMGVSRE RVRQIESSAF RKLKNKKRNN HLQQYLVAQT KES

Best Arabidopsis Sequence Match ( AT1G08540.1 )
(BLAST)

001: MSSCLLPQFK CPPDSFSIHF RTSFCAPKHN KGSVFFQPQC AVSTSPALLT SMLDVAKLRL PSFDTDSDSL ISDRQWTYTR PDGPSTEAKY LEALASETLL
101: TSDEAVVVAA AAEAVALARA AVKVAKDATL FKNSNNTNLL TSSTADKRSK WDQFTEKERA GILGHLAVSD NGIVSDKITA SASNKESIGD LESEKQEEVE
201: LLEEQPSVSL AVRSTRQTER KARRAKGLEK TASGIPSVKT GSSPKKKRLV AQEVDHNDPL RYLRMTTSSS KLLTVREEHE LSAGIQDLLK LERLQTELTE
301: RSGRQPTFAQ WASAAGVDQK SLRQRIHHGT LCKDKMIKSN IRLVISIAKN YQGAGMNLQD LVQEGCRGLV RGAEKFDATK GFKFSTYAHW WIKQAVRKSL
401: SDQSRMIRLP FHMVEATYRV KEARKQLYSE TGKHPKNEEI AEATGLSMKR LMAVLLSPKP PRSLDQKIGM NQNLKPSEVI ADPEAVTSED ILIKEFMRQD
501: LDKVLDSLGT REKQVIRWRF GMEDGRMKTL QEIGEMMGVS RERVRQIESS AFRKLKNKKR NNHLQQYLVA QS

Arabidopsis Description

SIGBRNA polymerase sigma factor sigB [Source:UniProtKB/Swiss-Prot;Acc:O22056]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.