Factsheet for Os03t0271100-01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
nucleus 2
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G210000.1	Wheat	plastid	78.7	77.55
TraesCS4A01G095200.1	Wheat	plastid	78.52	77.37
TraesCS4B01G209300.1	Wheat	plastid	78.33	77.33
HORVU4Hr1G060200.1	Barley	plastid	77.96	76.82
EER95113	Sorghum	plastid	74.07	75.76
Zm00001d028585_P001	Maize	plastid	72.96	74.62
Os11t0448400-02	Rice	nucleus	52.96	67.61
KRH51354	Soybean	nucleus	41.48	44.8
VIT_15s0024g00640.t01	Wine grape	plastid	44.63	41.91
KRH60664	Soybean	nucleus	43.33	41.49
GSMUA_Achr7P04860_001	Banana	nucleus	41.85	41.24
GSMUA_Achr7P17330_001	Banana	nucleus, plastid	41.67	41.06
Bra030732.1-P	Field mustard	plastid	42.78	40.53
CDX97496	Canola	plastid	42.78	40.46
CDY31138	Canola	plastid	42.78	40.31
Bra018617.1-P	Field mustard	plastid	42.78	40.31
CDX93555	Canola	plastid	42.59	40.14
AT1G08540.1	Thale cress	plastid	42.22	39.86
CDX95052	Canola	plastid	42.41	39.28
Solyc01g081490.2.1	Tomato	nucleus	44.07	38.83
PGSC0003DMT400079883	Potato	plastid	43.52	38.34
Os08t0163400-01	Rice	nucleus	21.67	28.06
Os08t0242800-01	Rice	plastid	26.67	25.17
Os05t0586600-01	Rice	plastid	14.63	22.25
Os05t0589200-01	Rice	plasma membrane	17.96	20.91

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.601.10	MapMan:15.6.2.1	EntrezGene:4332388	ProteinID:AAP06868.1	EMBL:AB095095
ProteinID:ABF95209.1	EMBL:AK060821	EMBL:AK099036	ProteinID:BAF11602.1	ProteinID:BAS83475.1	ncoils:Coil
GO:GO:0001053	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0006351
GO:GO:0006352	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507
GO:GO:0009536	GO:GO:0009987	GO:GO:0016043	GO:GO:0016987	GO:GO:2000142	InterPro:IPR036388
EnsemblPlantsGene:Os03g0271100	EnsemblPlants:Os03t0271100-01	PFAM:PF04539	PFAM:PF04542	PFAM:PF04545	PIRSF:PIRSF000767
PRINTS:PR00046	ScanProsite:PS00716	PANTHER:PTHR30603	PANTHER:PTHR30603:SF25	UniProt:Q84Q84	InterPro:RNA_pol_sigma-70_dom
InterPro:RNA_pol_sigma70	InterPro:RNA_pol_sigma70_r2	InterPro:RNA_pol_sigma70_r3	InterPro:RNA_pol_sigma70_r4	InterPro:RNA_pol_sigma_SigB/C/D/F	InterPro:RNA_pol_sigma_r2
InterPro:RNA_pol_sigma_r3/r4-like	SUPFAM:SSF88659	SUPFAM:SSF88946	TIGRFAMs:TIGR02937	UniParc:UPI000018DC0A	InterPro:WH-like_DNA-bd_sf
RefSeq:XP_015630561.1	SEG:seg	:	:	:	:

Description

SIGMA FACTOR 2BSimilar to Sigma factor SIG2B. (Os03t0271100-01);Similar to Sigma factor SIG2B. (Os03t0271100-02);Similar to Sigma factor SIG2B. (Os03t0271100-03)

Coordinates

chr3:+:9064856..9068046

Molecular Weight (calculated)

60136.0 Da

IEP (calculated)

9.743

GRAVY (calculated)

-0.427

Length

540 amino acids

Sequence
(BLAST)

001: MACLAPQLKW PLSTRAAAFR EHGGAGIGGF RTVRLHCAVS TTALVEAESS DSLAPGARRL VVYDGAVAPP PLPGGFGEAI LNQEAVVAAA AAEAVALARA
101: AAEVAGEVVR MSQTEQRHRP DFVTTHDTED NYLAREILRA EAGLGARYAD ACLSEDAGFS SIFSDESEVD DDEQCVQGVA VKSVRQSERR ARRVRAAMKA
201: AKSFSGRNPV AASSSARKKR LKGCRSPLGC FYKMTGRRLL TAKQEVEFSQ GIQDLLKLEA IQKELAHYNG GEPTFSQWAE AAGTDENTLR KRLNYGISCK
301: NTMVKSNVRL VISIAREFEG PGMEFSDLIQ EGIQGLVRGA EKFDASKGFR FSTYSHWWIK QAIRKSVLEQ TQIIRLPAHM AEASSRVKEC RRRLRRQLKR
401: LPTNEEIASD TGMPLRRVEA AMSLPKYTVS LTSKVGCTDM TYQEITPDTS TETAEEMLHR WLMKEDVDRA LDGLSPRERQ VIRYRFGMDD GRLRTLHDIG
501: RLMGVSRERI RQIELVAFRK LRGRKKVQSL QHYLQPVESW

Best Arabidopsis Sequence Match ( AT1G08540.1 )
(BLAST)

001: MSSCLLPQFK CPPDSFSIHF RTSFCAPKHN KGSVFFQPQC AVSTSPALLT SMLDVAKLRL PSFDTDSDSL ISDRQWTYTR PDGPSTEAKY LEALASETLL
101: TSDEAVVVAA AAEAVALARA AVKVAKDATL FKNSNNTNLL TSSTADKRSK WDQFTEKERA GILGHLAVSD NGIVSDKITA SASNKESIGD LESEKQEEVE
201: LLEEQPSVSL AVRSTRQTER KARRAKGLEK TASGIPSVKT GSSPKKKRLV AQEVDHNDPL RYLRMTTSSS KLLTVREEHE LSAGIQDLLK LERLQTELTE
301: RSGRQPTFAQ WASAAGVDQK SLRQRIHHGT LCKDKMIKSN IRLVISIAKN YQGAGMNLQD LVQEGCRGLV RGAEKFDATK GFKFSTYAHW WIKQAVRKSL
401: SDQSRMIRLP FHMVEATYRV KEARKQLYSE TGKHPKNEEI AEATGLSMKR LMAVLLSPKP PRSLDQKIGM NQNLKPSEVI ADPEAVTSED ILIKEFMRQD
501: LDKVLDSLGT REKQVIRWRF GMEDGRMKTL QEIGEMMGVS RERVRQIESS AFRKLKNKKR NNHLQQYLVA QS

Arabidopsis Description

SIGBRNA polymerase sigma factor sigB [Source:UniProtKB/Swiss-Prot;Acc:O22056]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.