Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 7
- nucleus 2
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX97496 | Canola | plastid | 85.49 | 85.64 |
| Bra030732.1-P | Field mustard | plastid | 84.97 | 85.26 |
| CDY31138 | Canola | plastid | 85.31 | 85.17 |
| CDX93555 | Canola | plastid | 84.79 | 84.64 |
| Bra018617.1-P | Field mustard | plastid | 84.27 | 84.12 |
| CDX95052 | Canola | plastid | 85.66 | 84.05 |
| VIT_15s0024g00640.t01 | Wine grape | plastid | 67.13 | 66.78 |
| KRH51354 | Soybean | nucleus | 56.47 | 64.6 |
| KRH60664 | Soybean | nucleus | 60.49 | 61.35 |
| GSMUA_Achr7P04860_001 | Banana | nucleus | 57.17 | 59.67 |
| PGSC0003DMT400079883 | Potato | plastid | 63.11 | 58.89 |
| GSMUA_Achr7P17330_001 | Banana | nucleus, plastid | 56.12 | 58.58 |
| Solyc01g081490.2.1 | Tomato | nucleus | 62.76 | 58.56 |
| Os11t0448400-02 | Rice | nucleus | 37.41 | 50.59 |
| HORVU4Hr1G045100.1 | Barley | nucleus | 9.27 | 50.48 |
| HORVU4Hr1G044910.10 | Barley | nucleus | 40.38 | 48.43 |
| OQU83379 | Sorghum | plastid | 43.36 | 46.18 |
| TraesCS4B01G163500.1 | Wheat | plastid | 43.01 | 45.05 |
| TraesCS4A01G157100.1 | Wheat | plastid | 43.36 | 45.01 |
| Zm00001d049160_P002 | Maize | plastid | 43.36 | 44.85 |
| TraesCS4D01G154500.2 | Wheat | plastid | 43.36 | 44.13 |
| HORVU4Hr1G060200.1 | Barley | plastid | 40.91 | 42.7 |
| EER95113 | Sorghum | plastid | 39.34 | 42.61 |
| TraesCS4B01G209300.1 | Wheat | plastid | 40.38 | 42.23 |
| Os03t0271100-01 | Rice | mitochondrion | 39.86 | 42.22 |
| TraesCS4A01G095200.1 | Wheat | plastid | 40.38 | 42.15 |
| TraesCS4D01G210000.1 | Wheat | plastid | 40.38 | 42.15 |
| Zm00001d028585_P001 | Maize | plastid | 38.81 | 42.05 |
| AT2G36990.1 | Thale cress | plastid | 28.5 | 29.8 |
| AT5G13730.1 | Thale cress | plastid | 20.45 | 27.92 |
| AT1G64860.1 | Thale cress | nucleus | 21.85 | 24.9 |
| AT3G53920.1 | Thale cress | plastid | 23.25 | 23.29 |
| AT5G24120.3 | Thale cress | nucleus | 19.76 | 21.86 |
Protein Annotations
| Gene3D:1.10.10.10 | Gene3D:1.10.601.10 | MapMan:15.6.2.1 | EntrezGene:837376 | ProteinID:AAF22897.1 | ProteinID:AAF99752.1 |
| EMBL:AB004293 | EMBL:AB004820 | ProteinID:AEE28303.1 | EMBL:AF015543 | EMBL:AK118947 | ArrayExpress:AT1G08540 |
| EnsemblPlantsGene:AT1G08540 | RefSeq:AT1G08540 | TAIR:AT1G08540 | RefSeq:AT1G08540-TAIR-G | EnsemblPlants:AT1G08540.1 | TAIR:AT1G08540.1 |
| ProteinID:BAA82449.1 | EMBL:BT030346 | GO:GO:0001053 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006352 | GO:GO:0006355 | GO:GO:0006399 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009507 | GO:GO:0009536 | GO:GO:0009628 | GO:GO:0009658 |
| GO:GO:0009987 | GO:GO:0010114 | GO:GO:0016043 | GO:GO:0016987 | GO:GO:0071482 | GO:GO:2000142 |
| GO:GO:2001141 | InterPro:IPR036388 | RefSeq:NP_172330.1 | UniProt:O22056 | PFAM:PF04539 | PFAM:PF04542 |
| PFAM:PF04545 | PIRSF:PIRSF000767 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025281 | PRINTS:PR00046 | ScanProsite:PS00716 | PANTHER:PTHR30603 | PANTHER:PTHR30603:SF25 | InterPro:RNA_pol_sigma-70_dom |
| InterPro:RNA_pol_sigma70 | InterPro:RNA_pol_sigma70_r2 | InterPro:RNA_pol_sigma70_r3 | InterPro:RNA_pol_sigma70_r4 | InterPro:RNA_pol_sigma_SigB/C/D/F | InterPro:RNA_pol_sigma_r2 |
| InterPro:RNA_pol_sigma_r3/r4-like | Symbol:SIGB | SUPFAM:SSF88659 | SUPFAM:SSF88946 | TIGRFAMs:TIGR02937 | UniParc:UPI00000AD055 |
| InterPro:WH-like_DNA-bd_sf | EMBL:Y15362 | SEG:seg | : | : | : |
Description
SIGBRNA polymerase sigma factor sigB [Source:UniProtKB/Swiss-Prot;Acc:O22056]
Coordinates
chr1:+:2703295..2706860
Molecular Weight (calculated)
64057.7 Da
IEP (calculated)
10.094
GRAVY (calculated)
-0.551
Length
572 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSCLLPQFK CPPDSFSIHF RTSFCAPKHN KGSVFFQPQC AVSTSPALLT SMLDVAKLRL PSFDTDSDSL ISDRQWTYTR PDGPSTEAKY LEALASETLL
101: TSDEAVVVAA AAEAVALARA AVKVAKDATL FKNSNNTNLL TSSTADKRSK WDQFTEKERA GILGHLAVSD NGIVSDKITA SASNKESIGD LESEKQEEVE
201: LLEEQPSVSL AVRSTRQTER KARRAKGLEK TASGIPSVKT GSSPKKKRLV AQEVDHNDPL RYLRMTTSSS KLLTVREEHE LSAGIQDLLK LERLQTELTE
301: RSGRQPTFAQ WASAAGVDQK SLRQRIHHGT LCKDKMIKSN IRLVISIAKN YQGAGMNLQD LVQEGCRGLV RGAEKFDATK GFKFSTYAHW WIKQAVRKSL
401: SDQSRMIRLP FHMVEATYRV KEARKQLYSE TGKHPKNEEI AEATGLSMKR LMAVLLSPKP PRSLDQKIGM NQNLKPSEVI ADPEAVTSED ILIKEFMRQD
501: LDKVLDSLGT REKQVIRWRF GMEDGRMKTL QEIGEMMGVS RERVRQIESS AFRKLKNKKR NNHLQQYLVA QS
101: TSDEAVVVAA AAEAVALARA AVKVAKDATL FKNSNNTNLL TSSTADKRSK WDQFTEKERA GILGHLAVSD NGIVSDKITA SASNKESIGD LESEKQEEVE
201: LLEEQPSVSL AVRSTRQTER KARRAKGLEK TASGIPSVKT GSSPKKKRLV AQEVDHNDPL RYLRMTTSSS KLLTVREEHE LSAGIQDLLK LERLQTELTE
301: RSGRQPTFAQ WASAAGVDQK SLRQRIHHGT LCKDKMIKSN IRLVISIAKN YQGAGMNLQD LVQEGCRGLV RGAEKFDATK GFKFSTYAHW WIKQAVRKSL
401: SDQSRMIRLP FHMVEATYRV KEARKQLYSE TGKHPKNEEI AEATGLSMKR LMAVLLSPKP PRSLDQKIGM NQNLKPSEVI ADPEAVTSED ILIKEFMRQD
501: LDKVLDSLGT REKQVIRWRF GMEDGRMKTL QEIGEMMGVS RERVRQIESS AFRKLKNKKR NNHLQQYLVA QS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.