Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 7
- nucleus 2
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra014857.1-P | Field mustard | nucleus, plastid | 75.66 | 78.98 |
| CDY13153 | Canola | plastid | 81.79 | 69.49 |
| CDX76185 | Canola | plastid | 81.26 | 69.25 |
| PGSC0003DMT400010456 | Potato | nucleus | 6.13 | 50.72 |
| VIT_04s0008g00600.t01 | Wine grape | plastid | 44.31 | 45.1 |
| PGSC0003DMT400065483 | Potato | mitochondrion | 43.78 | 45.05 |
| Solyc08g065970.2.1 | Tomato | nucleus | 43.43 | 45.01 |
| KRH04862 | Soybean | mitochondrion | 43.08 | 44.65 |
| KRH16276 | Soybean | golgi, mitochondrion, nucleus, plastid | 29.77 | 41.16 |
| GSMUA_Achr4P01060_001 | Banana | golgi, mitochondrion, nucleus, plastid | 35.73 | 35.79 |
| TraesCS1A01G431600.2 | Wheat | plastid | 29.25 | 29.3 |
| TraesCS1B01G467100.1 | Wheat | plastid | 29.07 | 29.17 |
| TraesCS1D01G440900.1 | Wheat | plastid | 29.25 | 28.89 |
| Zm00001d039181_P001 | Maize | nucleus | 28.02 | 28.32 |
| Os05t0589200-01 | Rice | plasma membrane | 22.07 | 27.16 |
| EES18778 | Sorghum | plastid | 27.85 | 26.95 |
| AT5G13730.1 | Thale cress | plastid | 17.51 | 23.87 |
| AT1G08540.1 | Thale cress | plastid | 23.29 | 23.25 |
| AT2G36990.1 | Thale cress | plastid | 19.26 | 20.11 |
| AT5G24120.3 | Thale cress | nucleus | 15.59 | 17.21 |
| AT1G64860.1 | Thale cress | nucleus | 15.06 | 17.13 |
Protein Annotations
| Gene3D:1.10.10.10 | Gene3D:1.20.120.1810 | MapMan:15.6.2.1 | EntrezGene:824559 | EMBL:AB004822 | ProteinID:AEE79159.1 |
| EMBL:AF015544 | ArrayExpress:AT3G53920 | EnsemblPlantsGene:AT3G53920 | RefSeq:AT3G53920 | TAIR:AT3G53920 | RefSeq:AT3G53920-TAIR-G |
| EnsemblPlants:AT3G53920.1 | TAIR:AT3G53920.1 | EMBL:AY128331 | Unigene:At.21270 | ProteinID:BAA82450.1 | EMBL:BT030362 |
| ProteinID:CAB88354.1 | EMBL:D89994 | GO:GO:0001053 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0003824 | GO:GO:0003899 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006352 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009507 | GO:GO:0009536 | GO:GO:0009628 |
| GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016740 | GO:GO:0016987 | GO:GO:0071482 | GO:GO:2000142 |
| GO:GO:2001141 | InterPro:IPR036388 | RefSeq:NP_190960.1 | UniProt:O24621 | PFAM:PF04539 | PFAM:PF04542 |
| PFAM:PF04545 | PIRSF:PIRSF000767 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PRINTS:PR00046 | PANTHER:PTHR30603 |
| PANTHER:PTHR30603:SF13 | InterPro:RNA_pol_sigma-70_dom | InterPro:RNA_pol_sigma70 | InterPro:RNA_pol_sigma70_r2 | InterPro:RNA_pol_sigma70_r3 | InterPro:RNA_pol_sigma70_r4 |
| InterPro:RNA_pol_sigma_SigB/C/D/F | InterPro:RNA_pol_sigma_r2 | InterPro:RNA_pol_sigma_r3/r4-like | Symbol:SIGC | SUPFAM:SSF88659 | SUPFAM:SSF88946 |
| TIGRFAMs:TIGR02937 | UniParc:UPI00000AC78A | InterPro:WH-like_DNA-bd_sf | SEG:seg | : | : |
Description
SIGCRNA polymerase sigma factor sigC [Source:UniProtKB/Swiss-Prot;Acc:O24621]
Coordinates
chr3:-:19960789..19963980
Molecular Weight (calculated)
64909.3 Da
IEP (calculated)
10.389
GRAVY (calculated)
-0.449
Length
571 amino acids
Sequence
(BLAST)
(BLAST)
001: MASFNSFPIP KQIVGSSSSS SSSTSRPRIL VRSSLTSSMT STNSMLVFVH PHPLIKHWLS LLRSDQTSFP IFVRIPMTSV VATRWSFLSS VKEESRIYQN
101: DSLKACGCAS VSPYTAQNNV YVELKDPKEN IGVGSAERSY SSRSMLQYNL LAKNLLALEE TFVALDSVRM ERDIMLQMGK LGAAELFKTC LSRYRGSSIT
201: SCLSDTTELV DTTPNQQVFV SSRRKVKKKA RRSSVTAENG DQSSLPIGLR TTWNNIDVPR VRRPPKYRKK RERISRNETE MSTGVKIVAD MERIRTQLEE
301: ESGKVASLSC WAAAAGMNEK LLMRNLHYGW YCRDELVKST RSLVLFLARN YRGLGIAHED LIQAGYVGVL QGAERFDHTR GYKFSTYVQY WIRKSMSTMV
401: SRHARGVHIP SSIIRTINHI QKARKTLKTS HGIKYAADEE IAKLTGHSVK KIRAANQCLK VVGSIDKKVG DCFTTKFLEF TPDTTMESPE EAVMRQSARR
501: DIHDLLEGLE PREKQVMVLR YGLQDYRPKS LEEIGKLLKV SKEWIRKIER RAMAKLRDQP NAEDLRYYLN Q
101: DSLKACGCAS VSPYTAQNNV YVELKDPKEN IGVGSAERSY SSRSMLQYNL LAKNLLALEE TFVALDSVRM ERDIMLQMGK LGAAELFKTC LSRYRGSSIT
201: SCLSDTTELV DTTPNQQVFV SSRRKVKKKA RRSSVTAENG DQSSLPIGLR TTWNNIDVPR VRRPPKYRKK RERISRNETE MSTGVKIVAD MERIRTQLEE
301: ESGKVASLSC WAAAAGMNEK LLMRNLHYGW YCRDELVKST RSLVLFLARN YRGLGIAHED LIQAGYVGVL QGAERFDHTR GYKFSTYVQY WIRKSMSTMV
401: SRHARGVHIP SSIIRTINHI QKARKTLKTS HGIKYAADEE IAKLTGHSVK KIRAANQCLK VVGSIDKKVG DCFTTKFLEF TPDTTMESPE EAVMRQSARR
501: DIHDLLEGLE PREKQVMVLR YGLQDYRPKS LEEIGKLLKV SKEWIRKIER RAMAKLRDQP NAEDLRYYLN Q
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.