Factsheet for TraesCS1D01G440900.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G431600.2	Wheat	plastid	91.52	92.81
TraesCS1B01G467100.1	Wheat	plastid	90.83	92.27
Os05t0589200-01	Rice	plasma membrane	59.0	73.49
EES18778	Sorghum	plastid	64.71	63.39
Zm00001d039181_P001	Maize	nucleus	60.55	61.95
PGSC0003DMT400010456	Potato	nucleus	5.02	42.03
GSMUA_Achr4P01060_001	Banana	golgi, mitochondrion, nucleus, plastid	39.27	39.82
VIT_04s0008g00600.t01	Wine grape	plastid	34.6	35.65
Solyc08g065970.2.1	Tomato	nucleus	30.97	32.49
PGSC0003DMT400065483	Potato	mitochondrion	31.14	32.43
KRH04862	Soybean	mitochondrion	30.45	31.94
Bra014857.1-P	Field mustard	nucleus, plastid	28.89	30.53
KRH16276	Soybean	golgi, mitochondrion, nucleus, plastid	21.63	30.27
AT3G53920.1	Thale cress	plastid	28.89	29.25
CDX76185	Canola	plastid	28.72	24.78
TraesCS4D01G154500.2	Wheat	plastid	23.88	24.56
CDY13153	Canola	plastid	28.55	24.55
TraesCS4D01G210000.1	Wheat	plastid	22.84	24.09
TraesCS1D01G436500.1	Wheat	plastid	17.82	20.85
TraesCS5D01G551200.1	Wheat	plastid	19.2	19.86
TraesCS7D01G292000.1	Wheat	plastid	17.13	19.37

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.601.10	MapMan:15.6.2.1	GO:GO:0003674	GO:GO:0003700	GO:GO:0006139
GO:GO:0006352	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR036388	PFAM:PF04539	PFAM:PF04542	PFAM:PF04545	PIRSF:PIRSF000767	PRINTS:PR00046
PANTHER:PTHR30603	PANTHER:PTHR30603:SF13	InterPro:RNA_pol_sigma-70_dom	InterPro:RNA_pol_sigma70	InterPro:RNA_pol_sigma70_r2	InterPro:RNA_pol_sigma70_r3
InterPro:RNA_pol_sigma70_r4	InterPro:RNA_pol_sigma_SigB/C/D/F	InterPro:RNA_pol_sigma_r2	InterPro:RNA_pol_sigma_r3/r4-like	SUPFAM:SSF88659	SUPFAM:SSF88946
TIGRFAMs:TIGR02937	EnsemblPlantsGene:TraesCS1D01G440900	EnsemblPlants:TraesCS1D01G440900.1	InterPro:WH-like_DNA-bd_sf	TIGR:cd06171	SEG:seg

Description

No Description!

Coordinates

chr1D:+:486155468..486157967

Molecular Weight (calculated)

65015.1 Da

IEP (calculated)

9.710

GRAVY (calculated)

-0.404

Length

578 amino acids

Sequence
(BLAST)

001: MGLPMVRGPC FCSPSPSSSS SSSSSSSPWM LQAHLPKHPH PRHGLSGRSV WSESLRVLAL HLLLNRRADL CRRRGDIART AASSSGLLQI TENKATSSPK
101: TKVDAERTSL VGSLDRNAGF DMIYEDMSSW MDVAHTSSNS LEYNLLMQNI HVLQSSLAAQ DLVVLERDIL VHIEQLGALK WFNASRSSAT ITPTSLESDF
201: ALPWNDTEFA PVTPLDEQSD DDQLVVIRSG KSQERKLKRI RASENISGVC VKVSSRKPRK SRKSTSSQFI SEWKNYPGRR RSIVREQSDL LVTIKECANL
301: EKIRENMVKE GQEVCYDKWA KAAGVDEAVL KSRLQAGYCC RERLLVTTEW LVKYIARTYT GMGTAFEDLL QAGKMGVLDG AERFDSQRGC KFSTYVKYWI
401: RKPMLALLAE NSGVIQLPAR MDCIIRKVRE AKRAIRSSTG RNPIDAEIAT FVGASVANVR LARKCSRRVV SLYMEVGAGQ NAKFVDVTPD TSIDDPEEAI
501: FRRQLRERLL MVLDRLPTRE GRVLKLRHGL EDGRCRSLEQ IGGIYHVSKE WIRKIEKSAM SKLRNEDVHD ELKDFCGF

Best Arabidopsis Sequence Match ( AT3G53920.1 )
(BLAST)

001: MASFNSFPIP KQIVGSSSSS SSSTSRPRIL VRSSLTSSMT STNSMLVFVH PHPLIKHWLS LLRSDQTSFP IFVRIPMTSV VATRWSFLSS VKEESRIYQN
101: DSLKACGCAS VSPYTAQNNV YVELKDPKEN IGVGSAERSY SSRSMLQYNL LAKNLLALEE TFVALDSVRM ERDIMLQMGK LGAAELFKTC LSRYRGSSIT
201: SCLSDTTELV DTTPNQQVFV SSRRKVKKKA RRSSVTAENG DQSSLPIGLR TTWNNIDVPR VRRPPKYRKK RERISRNETE MSTGVKIVAD MERIRTQLEE
301: ESGKVASLSC WAAAAGMNEK LLMRNLHYGW YCRDELVKST RSLVLFLARN YRGLGIAHED LIQAGYVGVL QGAERFDHTR GYKFSTYVQY WIRKSMSTMV
401: SRHARGVHIP SSIIRTINHI QKARKTLKTS HGIKYAADEE IAKLTGHSVK KIRAANQCLK VVGSIDKKVG DCFTTKFLEF TPDTTMESPE EAVMRQSARR
501: DIHDLLEGLE PREKQVMVLR YGLQDYRPKS LEEIGKLLKV SKEWIRKIER RAMAKLRDQP NAEDLRYYLN Q

Arabidopsis Description

SIGCRNA polymerase sigma factor sigC [Source:UniProtKB/Swiss-Prot;Acc:O24621]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.