Factsheet for TraesCS1D01G436500.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G461600.1	Wheat	plastid	96.96	97.36
TraesCS1A01G426700.1	Wheat	plastid	96.96	96.96
Zm00001d039194_P001	Maize	plastid	72.87	72.43
EES18781	Sorghum	plastid	73.28	72.26
Os05t0586600-01	Rice	plastid	39.68	55.21
GSMUA_Achr7P24590_001	Banana	plastid	50.81	49.7
CDY19846	Canola	nucleus	47.37	47.95
Bra026466.1-P	Field mustard	nucleus	46.96	47.74
PGSC0003DMT400023432	Potato	plastid	49.8	47.67
KRH53442	Soybean	plastid	48.79	47.53
CDX87140	Canola	plastid	48.38	47.51
VIT_16s0050g02520.t01	Wine grape	plastid	49.19	46.91
Solyc03g007370.2.1	Tomato	plastid	48.79	46.8
KRH16520	Soybean	mitochondrion, nucleus	47.98	46.29
Bra009735.1-P	Field mustard	plastid	47.77	46.27
KRH18145	Soybean	mitochondrion, nucleus	47.37	45.7
AT5G24120.3	Thale cress	nucleus	47.57	45.45
KRH64502	Soybean	plastid	47.57	45.28
CDX80416	Canola	nucleus	47.77	42.07
CDX88078	Canola	cytosol, mitochondrion, nucleus, vacuole	47.57	40.03
TraesCS7D01G292000.1	Wheat	plastid	20.65	19.96
TraesCS4D01G210000.1	Wheat	plastid	21.26	19.16
TraesCS1D01G440900.1	Wheat	plastid	20.85	17.82
TraesCS4D01G154500.2	Wheat	plastid	19.84	17.44
TraesCS5D01G551200.1	Wheat	plastid	19.64	17.35

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.20.120.1810	MapMan:15.6.2.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003700
GO:GO:0006139	GO:GO:0006352	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	InterPro:IPR036388	PFAM:PF04539	PFAM:PF04542	PFAM:PF04545	PRINTS:PR00046
PANTHER:PTHR30603	PANTHER:PTHR30603:SF4	InterPro:RNA_pol_sigma-70_dom	InterPro:RNA_pol_sigma70	InterPro:RNA_pol_sigma70_r2	InterPro:RNA_pol_sigma70_r3
InterPro:RNA_pol_sigma70_r4	InterPro:RNA_pol_sigma_r2	InterPro:RNA_pol_sigma_r3/r4-like	SUPFAM:SSF88659	SUPFAM:SSF88946	TIGRFAMs:TIGR02937
EnsemblPlantsGene:TraesCS1D01G436500	EnsemblPlants:TraesCS1D01G436500.1	InterPro:WH-like_DNA-bd_sf	SEG:seg	:	:

Description

No Description!

Coordinates

chr1D:-:484265185..484267313

Molecular Weight (calculated)

56206.9 Da

IEP (calculated)

10.956

GRAVY (calculated)

-0.661

Length

494 amino acids

Sequence
(BLAST)

001: MTSTVTTPTP SRPLPAGPQR RRYRPTVLAI AGGSKPPRRR APAAATSCAA LAAPEKQSTA TAKLSTSPAP AQASEGTDYD EVAATLETLY KLSPVIVEED
101: EKRSKKQAAT KKKRKQGRTK SAATTTTATP RRTVVVRSQR RRRMDLGKRV EMRDLAAGRE DEHRDGERAF EEALLREHAV STDMGSLDWR RMKIPPVLSA
201: AQSARLFKIM QPMKAILEVQ ENLRNELQSE PTDAEVAEAM NMPVQRLRRL RDVGRAARNK LIKHNLRLVL YAINKYYPDM TGDERFADLC QAGANGLITA
301: IDRFEPKRGF RISTYALFWI RHSVVRAMTL SSFTRFPFAM ESERQEINRA REELSFELGR APTDEETMKK VGLSPARYRD VVRMTRPTYS LHSRNRVTQE
401: ELIKEVTDVD AIGVDTHKHN RLLRLAIDDL LDSLKPKESV VIRQRFGLDG RGRRTLSEIA GNLRISREMV RKYELKALMK LKHPTRVDYL RRYM

Best Arabidopsis Sequence Match ( AT5G24120.1 )
(BLAST)

001: MGVVSISSSA ARSPLGLGND LLTHRSSLKK PSIVAFKADD SSNSALIIPP REQVLIPAEK HNEKKREVTR RKPCKTPKKP LSLEHNSAPS CSLGVDYNEA
101: AARLESIYKL SPATTTLVED DVEDGGSKAK VSRRRKRKES GEEKKVVVRN NVKKEKRMSL DKRIALKRNV QEKPVVASVD KKVTKRQQEE EKIERLVRDY
201: SASNDIVSLD WKKMKIPPVL SSTEHAWLFK LMQPMKALLE VKDVLQKSLG REPREAEIAG EINMTAGEVK KKIEIGRAAR NKLIKHNLRL VLFVMNKYFH
301: EFTNGPKFQD LCQAGMRGLI TAIDRFEPKR KFRLSTYGLF WIRHAIIRSM TTSNFTRVPF GLESVRVEIY KAKTELWFEM GRPPTEDEVV ERLKITPERY
401: REVLRAAKPV LSLNSKHSVT QEEFINGITD VDGVGANNSR QPALLRLALD DVLDSLKPKE SLVIRQRYGL DGKGDRTLGE IAGNLNISRE MVRKHEVKAL
501: MKLKHQARVD YLRQYIV

Arabidopsis Description

SIGERNA polymerase sigma factor sigE, chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9ZNX9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.