Factsheet for TraesCS5D01G551200.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G150300.2
TraesCS3B01G177300.1
TraesCS3D01G158200.1
TraesCS6A01G272000.1
TraesCS6B01G299600.1
TraesCS6D01G252200.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G36990.1	TraesCS6A01G272000.1	AT3G50910.1	21798944
AT2G36990.1	TraesCS6B01G299600.1	AT3G50910.1	21798944
AT2G36990.1	TraesCS6D01G252200.1	AT3G50910.1	21798944
AT2G36990.1	TraesCS3A01G150300.2	AT5G58720.1	21798944
AT2G36990.1	TraesCS3B01G177300.1	AT5G58720.1	21798944
AT2G36990.1	TraesCS3D01G158200.1	AT5G58720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G563800.2	Wheat	plastid	97.85	97.16
TraesCS4A01G315700.3	Wheat	plastid	94.28	93.11
HORVU5Hr1G125110.10	Barley	plastid	89.62	90.6
KXG37075	Sorghum	plastid	72.63	73.15
Os08t0242800-01	Rice	plastid	73.88	72.2
Zm00001d012810_P003	Maize	plastid	52.77	68.93
GSMUA_Achr4P30300_001	Banana	nucleus	19.86	55.22
CDY66142	Canola	nucleus	29.87	49.41
GSMUA_Achr11P...	Banana	nucleus	42.58	41.11
CDX79708	Canola	endoplasmic reticulum, extracellular	10.73	40.27
VIT_08s0040g01560.t01	Wine grape	plastid	40.25	40.11
Bra017213.1-P	Field mustard	plastid	38.1	39.96
CDY18468	Canola	plastid	38.82	39.89
AT2G36990.1	Thale cress	plastid	38.28	39.12
KRG96007	Soybean	nucleus	37.57	37.91
KRH67719	Soybean	nucleus	37.21	37.55
Solyc09g008040.2.1	Tomato	nucleus, plastid	37.75	37.48
PGSC0003DMT400055506	Potato	nucleus, plastid	37.39	35.91
KRH32532	Soybean	nucleus, plastid	36.85	35.83
KRH19920	Soybean	plastid	36.67	35.71
TraesCS4D01G210000.1	Wheat	plastid	25.4	25.91
TraesCS4D01G154500.2	Wheat	plastid	25.4	25.27
TraesCS7D01G292000.1	Wheat	plastid	21.29	23.29
TraesCS1D01G436500.1	Wheat	plastid	17.35	19.64
TraesCS1D01G440900.1	Wheat	plastid	19.86	19.2

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.601.10	MapMan:15.6.2.1	GO:GO:0003674	GO:GO:0003700	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0006352	GO:GO:0006355
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536
GO:GO:0009628	GO:GO:0009791	GO:GO:0009987	GO:GO:0016987	GO:GO:0045893	GO:GO:0071482
GO:GO:0071483	GO:GO:0090351	InterPro:IPR036388	PFAM:PF04539	PFAM:PF04542	PFAM:PF04545
PIRSF:PIRSF000767	PRINTS:PR00046	PANTHER:PTHR30603	PANTHER:PTHR30603:SF9	InterPro:RNA_pol_sigma-70_dom	InterPro:RNA_pol_sigma70
InterPro:RNA_pol_sigma70_r2	InterPro:RNA_pol_sigma70_r3	InterPro:RNA_pol_sigma70_r4	InterPro:RNA_pol_sigma_SigB/C/D/F	InterPro:RNA_pol_sigma_r2	InterPro:RNA_pol_sigma_r3/r4-like
SUPFAM:SSF88659	SUPFAM:SSF88946	TIGRFAMs:TIGR02937	EnsemblPlantsGene:TraesCS5D01G551200	EnsemblPlants:TraesCS5D01G551200.1	InterPro:WH-like_DNA-bd_sf
TIGR:cd06171	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr5D:+:557191963..557194506

Molecular Weight (calculated)

63230.8 Da

IEP (calculated)

9.991

GRAVY (calculated)

-0.578

Length

559 amino acids

Sequence
(BLAST)

001: MNSSRSLLSS PLFPTSSPNF RSSPSPSRAS VPMIHDSTGR ASTACHYSPS LVAEEQQAHG SVALKGEKAL LEFLLDMALE QHTEGKTFKG EDGAEGEFES
101: YLRGLQRQVI YQQAFGQKNN FTSAITSTST PSAKSVPTLD LKTTSATLMK EVAFLADGSS PSTTQLNVPP TLATSVESTH PYEKLLSNGQ VFIRSTRLLE
201: RRSKKRNVPQ ASTSSTDVVQ CSVADSKKKE KPKKYGRVLG PDEPFRLFLR DRETTEFLTA KEERHLFSQI QNLMKLEEAQ RRLEAQCGRE PTLPEWAQAV
301: GMSCKELQSS IHMGRRCREK MARSNFRLVI HVARKYQGYG LDIEDLVQDG CCGLMKTFEK FNPSKGCRFP TYAYWWIRQA IKKSIFKHSR LIRLPESVYA
401: RLKKVGKARL ECILEGEQPT NQNVARRAGI TIEKLAKLKA KTRKPRSMQD QVWSNDAVTF QEITEDPNID PPDLVVDRIM MRQQVREFLG ILTTREKEII
501: EHRFGIYDGE PKTLHVIGDM YGLSKERIRQ LQNRALDKLK RSVSTQGFHV YLDLLTSNG

Best Arabidopsis Sequence Match ( AT2G36990.1 )
(BLAST)

001: MEATRNLVSS SPSFQTKTHL KSSYSSPSSV VMLHDQTTTP VVNSRHLNSL SRHFPASVLS QEPREESRPL SHALRDDRTS QLTLERRQFD ELVSSREDEK
101: FEQQLLHSTG LWNLLISPLT SETKLPAVVS PLADAELCDV VALAQKALSA SKQAALLVDD TEANPSDNIK DSLSTSSSMS LPEKGNIVRS KRQLERRAKN
201: RRAPKSNDVD DEGYVPQKTS AKKKYKQGAD NDDALQLFLW GPETKQLLTA KEEAELISHI QHLLKLEKVK TKLESQNGCE PTIGEWAEAM GISSPVLKSD
301: IHRGRSSREK LITANLRLVV HIAKQYQNRG LNFQDLLQEG SMGLMKSVEK FKPQSGCRFA TYAYWWIRQS IRKSIFQNSR TIRLPENVYM LLGKVSEARK
401: TCVQEGNYRP SKEELAGHVG VSTEKLDKLL YNTRTPLSMQ QPIWSDQDTT FQEITPDSGI ETPTMSVGKQ LMRNHVRNLL NVLSPKERRI IKLRFGIDGG
501: KQRSLSEIGE IYGLSKERVR QLESRALYRL KQNMNSHGLH AYADLLV

Arabidopsis Description

SIGFRNA polymerase sigma factor sigF, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LD95]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.