Factsheet for Solyc09g008040.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 4
nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g085000.2.1
Solyc06g007110.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G36990.1	Solyc02g085000.2.1	AT3G50910.1	21798944
AT2G36990.1	Solyc06g007110.2.1	AT5G58720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400055506	Potato	nucleus, plastid	96.63	93.47
CDY66142	Canola	nucleus	39.79	66.27
GSMUA_Achr4P30300_001	Banana	nucleus	21.85	61.19
CDX79708	Canola	endoplasmic reticulum, extracellular	16.16	61.07
VIT_08s0040g01560.t01	Wine grape	plastid	57.9	58.11
Bra017213.1-P	Field mustard	plastid	52.93	55.91
CDY18468	Canola	plastid	53.29	55.15
AT2G36990.1	Thale cress	plastid	53.46	55.03
KRH32532	Soybean	nucleus, plastid	53.11	52.0
KRH19920	Soybean	plastid	51.69	50.7
KRG96007	Soybean	nucleus	49.38	50.18
KRH67719	Soybean	nucleus	48.85	49.64
GSMUA_Achr11P...	Banana	nucleus	48.13	46.8
KXG37075	Sorghum	plastid	38.37	38.92
Os08t0242800-01	Rice	plastid	38.9	38.29
TraesCS5B01G563800.2	Wheat	plastid	38.01	38.01
HORVU5Hr1G125110.10	Barley	plastid	37.12	37.79
TraesCS5D01G551200.1	Wheat	plastid	37.48	37.75
TraesCS4A01G315700.3	Wheat	plastid	37.83	37.63
Zm00001d012810_P003	Maize	plastid	25.75	33.88
Solyc01g087690.1.1	Tomato	nucleus	21.67	28.98
Solyc06g072710.2.1	Tomato	nucleus	23.09	25.74
Solyc01g081490.2.1	Tomato	nucleus	27.89	25.61
Solyc03g097320.2.1	Tomato	nucleus, plastid	22.38	24.75
Solyc08g065970.2.1	Tomato	nucleus	21.14	21.6
Solyc03g007370.2.1	Tomato	plastid	19.54	21.36

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.601.10	MapMan:15.6.2.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006352	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016987	GO:GO:2000142
InterPro:IPR036388	UniProt:K4CQJ3	PFAM:PF04539	PFAM:PF04542	PFAM:PF04545	PRINTS:PR00046
ScanProsite:PS00715	ScanProsite:PS00716	PANTHER:PTHR30603	PANTHER:PTHR30603:SF9	InterPro:RNA_pol_sigma-70_dom	InterPro:RNA_pol_sigma70
InterPro:RNA_pol_sigma70_r2	InterPro:RNA_pol_sigma70_r3	InterPro:RNA_pol_sigma70_r4	InterPro:RNA_pol_sigma_r2	InterPro:RNA_pol_sigma_r3/r4-like	SUPFAM:SSF88659
SUPFAM:SSF88946	EnsemblPlantsGene:Solyc09g008040.2	EnsemblPlants:Solyc09g008040.2.1	TIGRFAMs:TIGR02937	UniParc:UPI000276BB11	InterPro:WH-like_DNA-bd_sf
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr9:+:1508019..1514485

Molecular Weight (calculated)

63906.0 Da

IEP (calculated)

10.215

GRAVY (calculated)

-0.550

Length

563 amino acids

Sequence
(BLAST)

001: MEAAGRNLLS SPPTFSQKTQ LRNCSSSVLM LHEHAAPVLS SVPHTYLGRY VPASAIGPEQ HFENRLQLHL VKEEKTSLAT IDRRLVEAAS SELEENDAVD
101: SEQNINALQV QLLHWPGPSY SFPPYYLKGK GPLSPNKEPL HSKGDKLMNF EPHSVVALAR KALLASKEAA LLAEDSKLLD DSHFPNFLST HLVDDKLKEQ
201: RTVRSTRFIE RQSRKRGAPK PIQEVQETNN RSGRPDVRRK VNESIDLNDP LRMFLWGPET KQLLTAKEES ELIVKIQISM KLQEVKHQLQ IQFAREPTSL
301: EWAEAAGITS RELKSQLLSG KSSREKLINA NLRMVVHIAK QYQGRGLNLQ DLLQEGSMGL MKSVEKFKPQ AGCRFPTYAY WWIRQSVRKA IFQHSRTIRL
401: PENVYALLSK VKDAKRECIR QGNRHPTKED IASCAGMSVE RLQNLLSNVR TPLSMQQSVW SDQDTTFQEI TADNAIEAPE LSVSKQLMRR HIRGLLNVLS
501: PKERKIIRLR FGIGDGKPKS LSEIGAVFGL SKERVRQLET RALYKLKQNL NKHGLDAYSD LLF

Best Arabidopsis Sequence Match ( AT2G36990.1 )
(BLAST)

001: MEATRNLVSS SPSFQTKTHL KSSYSSPSSV VMLHDQTTTP VVNSRHLNSL SRHFPASVLS QEPREESRPL SHALRDDRTS QLTLERRQFD ELVSSREDEK
101: FEQQLLHSTG LWNLLISPLT SETKLPAVVS PLADAELCDV VALAQKALSA SKQAALLVDD TEANPSDNIK DSLSTSSSMS LPEKGNIVRS KRQLERRAKN
201: RRAPKSNDVD DEGYVPQKTS AKKKYKQGAD NDDALQLFLW GPETKQLLTA KEEAELISHI QHLLKLEKVK TKLESQNGCE PTIGEWAEAM GISSPVLKSD
301: IHRGRSSREK LITANLRLVV HIAKQYQNRG LNFQDLLQEG SMGLMKSVEK FKPQSGCRFA TYAYWWIRQS IRKSIFQNSR TIRLPENVYM LLGKVSEARK
401: TCVQEGNYRP SKEELAGHVG VSTEKLDKLL YNTRTPLSMQ QPIWSDQDTT FQEITPDSGI ETPTMSVGKQ LMRNHVRNLL NVLSPKERRI IKLRFGIDGG
501: KQRSLSEIGE IYGLSKERVR QLESRALYRL KQNMNSHGLH AYADLLV

Arabidopsis Description

SIGFRNA polymerase sigma factor sigF, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LD95]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.