CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
OQU78405
OQU85551
OQU86087

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G36990.1	OQU78405	AT3G50910.1	21798944
AT2G36990.1	OQU85551	AT3G50910.1	21798944
AT2G36990.1	OQU86087	AT5G58720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d012810_P003	Maize	plastid	67.75	87.85
TraesCS5D01G551200.1	Wheat	plastid	73.15	72.63
TraesCS5B01G563800.2	Wheat	plastid	73.33	72.29
TraesCS4A01G315700.3	Wheat	plastid	73.69	72.26
Os08t0242800-01	Rice	plastid	74.23	72.03
HORVU5Hr1G125110.10	Barley	plastid	70.45	70.71
GSMUA_Achr4P30300_001	Banana	nucleus	19.28	53.23
CDY66142	Canola	nucleus	30.45	50.0
CDX79708	Canola	endoplasmic reticulum, extracellular	11.35	42.28
GSMUA_Achr11P...	Banana	nucleus	42.34	40.59
Bra017213.1-P	Field mustard	plastid	38.2	39.77
CDY18468	Canola	plastid	38.92	39.71
VIT_08s0040g01560.t01	Wine grape	plastid	40.0	39.57
AT2G36990.1	Thale cress	plastid	38.02	38.57
Solyc09g008040.2.1	Tomato	nucleus, plastid	38.92	38.37
PGSC0003DMT400055506	Potato	nucleus, plastid	38.74	36.94
KRG96007	Soybean	nucleus	36.4	36.46
KRH67719	Soybean	nucleus	36.22	36.28
KRH19920	Soybean	plastid	36.94	35.71
KRH32532	Soybean	nucleus, plastid	36.76	35.48
EER95113	Sorghum	plastid	25.41	26.7
OQU83379	Sorghum	plastid	25.59	26.44
EES13412	Sorghum	plastid	21.08	23.4
EES18781	Sorghum	plastid	18.92	20.96
EES18778	Sorghum	plastid	21.98	20.68

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.601.10	MapMan:15.6.2.1	UniProt:A0A1B6QGM6	GO:GO:0001053	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0006351	GO:GO:0006352	GO:GO:0006355
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536
GO:GO:0009628	GO:GO:0009791	GO:GO:0009987	GO:GO:0016043	GO:GO:0016987	GO:GO:0045893
GO:GO:0071482	GO:GO:0071483	GO:GO:0090351	GO:GO:2000142	InterPro:IPR036388	EnsemblPlants:KXG37075
ProteinID:KXG37075	ProteinID:KXG37075.1	PFAM:PF04539	PFAM:PF04542	PFAM:PF04545	PIRSF:PIRSF000767
PRINTS:PR00046	PANTHER:PTHR30603	PANTHER:PTHR30603:SF9	InterPro:RNA_pol_sigma-70_dom	InterPro:RNA_pol_sigma70	InterPro:RNA_pol_sigma70_r2
InterPro:RNA_pol_sigma70_r3	InterPro:RNA_pol_sigma70_r4	InterPro:RNA_pol_sigma_SigB/C/D/F	InterPro:RNA_pol_sigma_r2	InterPro:RNA_pol_sigma_r3/r4-like	EnsemblPlantsGene:SORBI_3001G003200
SUPFAM:SSF88659	SUPFAM:SSF88946	TIGRFAMs:TIGR02937	UniParc:UPI00081ABCCA	InterPro:WH-like_DNA-bd_sf	SEG:seg

Description

hypothetical protein

Coordinates

chr1:+:282881..285375

Molecular Weight (calculated)

62696.8 Da

IEP (calculated)

9.512

GRAVY (calculated)

-0.636

Length

555 amino acids

Sequence
(BLAST)

001: MNSSRSLLSS PLFASSSPNF RSSTSVSVSS SPSPSRTTAV PMIHDNTGRA STACHYSPSL VAEEQLHGSK DTLTLKGEKA LLELLLGMAL DQHVDGGKLT
101: AEDTDFETYL KEATSRVLYQ PVFTEDDSTS ENSSASTAKT PGSLDLGKPT KEVELPAQES GTSDTQLDVP LPHRVDPNHS YEGLLSNDQV FIRSTRLLER
201: RSKKRNANRA LSNDVPCSGV NVNSKRKEKS KKFGRVLDPD EPFRLFLRDR ETTEFLTAKE EKQMFSQIQN LMKLEEAQRK LQAQCGREPT VAEWAQAVGM
301: SCRELQSCVR TGRRCREKMA RSNFRLVIHV ARKYEGHGLD IQDLVQDGCC GLMKTFEKFN PSKGCRFPTY AYWWIRQSIK KSIFKNSRLI RLPESVFALL
401: RKVGKARMEC IMDGEQPTNE NVARRAGITI EKLAKLRAKT RKPRSMQDRV WSDDGVTYQE VTEDPNIEPP EVSVDRLMMR QQVRSFLAGM LSPREKEIIE
501: HRFGIHDGQP KTLHVIGDMY GLSKERIRQV QNKALDKLKN TISAQGFHVY FDLLT

Best Arabidopsis Sequence Match ( AT2G36990.1 )
(BLAST)

001: MEATRNLVSS SPSFQTKTHL KSSYSSPSSV VMLHDQTTTP VVNSRHLNSL SRHFPASVLS QEPREESRPL SHALRDDRTS QLTLERRQFD ELVSSREDEK
101: FEQQLLHSTG LWNLLISPLT SETKLPAVVS PLADAELCDV VALAQKALSA SKQAALLVDD TEANPSDNIK DSLSTSSSMS LPEKGNIVRS KRQLERRAKN
201: RRAPKSNDVD DEGYVPQKTS AKKKYKQGAD NDDALQLFLW GPETKQLLTA KEEAELISHI QHLLKLEKVK TKLESQNGCE PTIGEWAEAM GISSPVLKSD
301: IHRGRSSREK LITANLRLVV HIAKQYQNRG LNFQDLLQEG SMGLMKSVEK FKPQSGCRFA TYAYWWIRQS IRKSIFQNSR TIRLPENVYM LLGKVSEARK
401: TCVQEGNYRP SKEELAGHVG VSTEKLDKLL YNTRTPLSMQ QPIWSDQDTT FQEITPDSGI ETPTMSVGKQ LMRNHVRNLL NVLSPKERRI IKLRFGIDGG
501: KQRSLSEIGE IYGLSKERVR QLESRALYRL KQNMNSHGLH AYADLLV

Arabidopsis Description

SIGFRNA polymerase sigma factor sigF, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LD95]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.