CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER90739
EER97037
EES01213
KXG22364
KXG25821
KXG31606
KXG34535
KXG37592
KXG37982
OQU79520
OQU79706
OQU80422
OQU80698
OQU87530

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G58720.1	KXG37592	AT2G30580.1	21798944
AT5G58720.1	KXG37982	AT2G30580.1	21798944
AT5G58720.1	OQU79520	AT2G30580.1	21798944
AT5G58720.1	EER97037	AT2G43370.1	21798944
AT5G58720.1	EER90739	AT3G09630.1	21798944
AT5G58720.1	KXG34535	AT3G09630.1	21798944
AT5G58720.1	KXG25821	AT4G15900.1	10220464
AT5G58720.1	OQU80698	AT5G22890.1	21798944
AT5G58720.1	KXG22364	AT5G58950.1	21798944
AT5G58720.1	KXG31606	AT5G58950.1	21798944
AT5G58720.1	OQU80422	AT5G58950.1	21798944
AT5G58720.1	OQU87530	AT5G58950.1	21798944
AT5G58720.1	EES01213	AT5G66460.1	21798944
AT5G58720.1	OQU79706	AT5G66460.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d017254_P002	Maize	cytosol	19.36	74.19
Zm00001d039321_P008	Maize	nucleus	71.04	64.53
TraesCS3B01G177300.1	Wheat	plastid	55.89	61.6
TraesCS3D01G158200.1	Wheat	plastid	60.61	61.02
TraesCS3A01G150300.2	Wheat	plastid	60.27	60.68
Os01t0225100-01	Rice	nucleus	26.94	56.74
GSMUA_Achr7P14310_001	Banana	endoplasmic reticulum, golgi	8.08	51.61
HORVU3Hr1G030600.8	Barley	mitochondrion	59.76	51.6
CDX71154	Canola	nucleus	29.63	40.0
GSMUA_Achr7P14320_001	Banana	nucleus	28.45	39.12
VIT_06s0004g06590.t01	Wine grape	nucleus	31.82	38.65
KRG98291	Soybean	nucleus	32.15	37.52
Bra006747.1-P	Field mustard	nucleus	30.81	36.82
CDY61025	Canola	nucleus	30.81	36.82
CDY32688	Canola	nucleus	30.81	35.95
KRH30312	Soybean	nucleus	30.98	35.94
Bra020357.1-P	Field mustard	nucleus	31.31	35.56
PGSC0003DMT400010646	Potato	nucleus	30.13	35.24
AT5G58720.1	Thale cress	nucleus	30.64	35.07
Solyc06g007110.2.1	Tomato	nucleus	29.8	34.77
CDY02832	Canola	nucleus	30.13	34.29
OQU85378	Sorghum	cytosol	18.69	22.2

Protein Annotations

EnsemblPlants:OQU86087	EnsemblPlantsGene:SORBI_3003G012100	EntrezGene:8081375	Gene3D:3.30.1370.110	InterPro:DUF1771	InterPro:IPR002625
InterPro:Smr_dom	InterPro:Smr_dom_sf	PANTHER:PTHR13308	PANTHER:PTHR13308:SF22	PFAM:PF08590	PFscan:PS50828
ProteinID:OQU86087	ProteinID:OQU86087.1	SEG:seg	SMART:SM00463	SMART:SM01162	SUPFAM:SSF160443
unigene:Sbi.3561	UniParc:UPI0009DC8269	UniProt:A0A1W0VVC2	MapMan:35.1	:	:

Description

hypothetical protein

Coordinates

chr3:-:1041271..1048877

Molecular Weight (calculated)

64044.1 Da

IEP (calculated)

7.082

GRAVY (calculated)

-0.586

Length

594 amino acids

Sequence
(BLAST)

001: MKPSQSKKKG KKKKKSSPPA AVPAPPPPAE GAADSEACSL LPETLTISAA AAATAAVSET ESSSSGEAST CASSACFTAS SSGTASSSSF SPFSSSASTA
101: SSSAAGEERR DLTWLLDAFA SATIDQIDSA YREAGGDPFV AAGILGSTQD TQPPQPPQPA PQPPPPPDLS PRSGSGGRKA GRRPKRVAVA ATGMVADVIG
201: KEYTRPVTAP VSVPNAWKGR DVERDGGSGG RKYSVEEAEQ FLCSMLGDNS ELGMGVVRDV LGQYGYDVEK KLQLLMKSAL DALLDISGVS SVENMETNHQ
301: NAGRNDTRHL CMFPGNGLSV DNLTAGNRSL QQLTDEISNT RFQSELGHEF LWSEPQISYA EAVKEAPRSP TLPSRSTVAK AGPQQVLDSL FKIPEIHTYE
401: PSSMDWKKVV KKLQMFNNTA ASNNQERPKN GDGYREFRGV AARHYDKMKE YYQKAALAYS KGDKSYASYL AEEGKHYREL GRLEDEKASR NIFEARNKHI
501: TNTITIDLHG QHVQQAMNLL KLNMMVCICM PSVLLRVITG CGSEGTGKGK IKRSVIELAE KEHIEWREEN SGTVALRLGG PREYRFLEHE NDSD

Best Arabidopsis Sequence Match ( AT5G58720.1 )
(BLAST)

001: MKQKNQHKKK KKRSCAAKPS GDGTTSDGNK KDVEEERKDG EGKREIENVG KNFIESLMEA FCSVSMEEAM AAYKEAGGDL NKAAEILSDL VESGDDPSTS
101: SVASGSSGQE TASTSEYGAG SSSSCSEDLT RDRWFKGSKQ SRVIAATGMV SSVIAKDYLK PNPVRKEFPM MERSKELCGN GKKAADREKA EQFLSSMLGD
201: DCELSMAVVR DVLCQCGYDV DMALNVLLDM SSSSTDDSLS GKCFGIGVSD SLAESSFDTD TSDCELFWGG DYSQRDYAKA LMSSQDPFAT TQGIDELGLP
301: QKVLESLFNI RQNPKHESKT TSWRNVAKKM QSLGIDASSS SGEEPHPNTF VKDDSYHELR KGANDQWNVT KSYYQKAAEA YSKGGRAHAA YLSDKGRVAS
401: KQAQRADERA SQDIFVARNK GIENVVTIDL HGQHVKPAMK LLKLHLLFGS YVPSIQTLRV ITGCGASGFG KSKVKQSVVK LLEREGVRYC EENRGTLLIK
501: LDGGSREFSF LDTESDSDE

Arabidopsis Description

PIPCSMR domain-containing protein At5g58720 [Source:UniProtKB/Swiss-Prot;Acc:O65573]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.