CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EER99396
EES01602
EES06901
EES11990
EES12098
EES13800
KXG21735
KXG30263
KXG35486

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G06770.1	KXG21735	AT5G05410.1	18552202
AT2G30580.1	EER99396	AT1G30860.1	21798944
AT2G30580.1	EES13800	AT2G46550.1	21798944
AT2G30580.1	KXG35486	AT2G46550.1	21798944
AT2G30580.1	EES06901	AT3G09980.1	21798944
AT2G30580.1	EES12098	AT3G09980.1	21798944
AT2G30580.1	KXG21735	AT5G05410.1	18552202
AT2G30580.1	EES11990	AT5G22310.1	21798944
AT2G30580.1	KXG30263	AT5G22310.1	21798944
AT3G23060.1	EES01602	AT5G45490.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d030985_P001	Maize	nucleus	62.5	72.48
Zm00001d041405_P001	Maize	nucleus	60.14	68.31
Os12t0600200-03	Rice	cytosol, nucleus	41.3	66.28
HORVU5Hr1G014430.6	Barley	nucleus	51.09	59.49
TraesCS5D01G069800.1	Wheat	nucleus	50.54	59.11
TraesCS5A01G058000.1	Wheat	nucleus	50.54	59.11
TraesCS5B01G065600.1	Wheat	cytosol	50.0	58.47
KXG37982	Sorghum	nucleus	42.93	45.93
Solyc09g065990.2.1	Tomato	nucleus	34.06	43.72
PGSC0003DMT400038984	Potato	nucleus	33.88	43.49
GSMUA_Achr9P10710_001	Banana	nucleus	31.34	43.47
AT2G30580.1	Thale cress	nucleus	31.88	41.9
AT1G06770.1	Thale cress	nucleus	31.16	40.86
VIT_07s0141g00610.t01	Wine grape	nucleus	31.7	40.7
KRG95629	Soybean	nucleus	31.52	40.65
GSMUA_Achr5P03230_001	Banana	nucleus	32.25	40.45
GSMUA_Achr4P17750_001	Banana	nucleus	28.26	40.1
CDY47131	Canola	nucleus	30.25	40.05
KRH67309	Soybean	nucleus	32.25	40.0
CDY29659	Canola	nucleus	30.25	39.67
CDX97807	Canola	nucleus	29.71	39.42
Solyc06g008600.2.1	Tomato	nucleus	29.71	39.23
CDY10748	Canola	nucleus	29.89	39.19
Solyc06g084040.2.1	Tomato	nucleus	30.43	38.98
VIT_14s0081g00070.t01	Wine grape	nucleus	31.7	38.98
KRG92687	Soybean	nucleus	30.43	38.8
Bra018304.1-P	Field mustard	nucleus	30.07	38.43
KRH34095	Soybean	nucleus	29.89	38.19
PGSC0003DMT400051660	Potato	nucleus	30.8	37.61
KRH32110	Soybean	nucleus	28.99	37.3
CDY23989	Canola	nucleus	28.62	36.83
KRH71326	Soybean	mitochondrion, nucleus	28.44	36.43
Bra022807.1-P	Field mustard	cytosol	4.53	35.71
Bra021651.1-P	Field mustard	nucleus	22.46	35.23
KXG37357	Sorghum	nucleus	24.28	34.54
VIT_05s0020g04730.t01	Wine grape	nucleus	28.8	33.54
Bra015526.1-P	Field mustard	nucleus	14.67	33.06
PGSC0003DMT400013629	Potato	nucleus	16.85	31.74
CDY06664	Canola	nucleus	21.38	30.81
KXG37592	Sorghum	mitochondrion, nucleus	25.91	29.3
Bra015525.1-P	Field mustard	cytosol	21.74	28.64
KRG92425	Soybean	nucleus	21.38	27.7
CDY61240	Canola	nucleus	8.7	26.67
KRH34379	Soybean	nucleus	20.83	26.38
PGSC0003DMT400087291	Potato	nucleus	13.95	24.76
Solyc01g020110.1.1	Tomato	endoplasmic reticulum	6.34	23.33
CDX94870	Canola	nucleus	18.84	23.16
Bra001901.1-P	Field mustard	nucleus	18.3	21.81
CDX92974	Canola	cytosol	18.12	21.6
Solyc09g083300.1.1	Tomato	nucleus, plastid	9.96	20.6
PGSC0003DMT400010761	Potato	nucleus	18.3	20.45
AT3G23060.1	Thale cress	nucleus	17.21	19.79
PGSC0003DMT400087288	Potato	plastid	5.62	18.67
Solyc09g083310.1.1	Tomato	nucleus	12.32	17.0
PGSC0003DMT400015657	Potato	nucleus, plastid	11.78	16.46
KXG34542	Sorghum	nucleus, plastid	12.32	12.73

Protein Annotations

EnsemblPlants:OQU79520	EnsemblPlantsGene:SORBI_3008G156200	EntrezGene:8070106	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_RING_CS	PANTHER:PTHR10825	PANTHER:PTHR10825:SF47	PFAM:PF13923
PFscan:PS50089	ProteinID:OQU79520	ProteinID:OQU79520.1	ScanProsite:PS00518	SEG:seg	SMART:SM00184
SUPFAM:SSF57850	unigene:Sbi.20656	UniParc:UPI000B8BA022	UniProt:A0A1Z5R714	MapMan:12.3.5.1.1.1	:

Description

hypothetical protein

Coordinates

chr8:-:58848313..58853757

Molecular Weight (calculated)

60773.3 Da

IEP (calculated)

9.214

GRAVY (calculated)

-0.601

Length

552 amino acids

Sequence
(BLAST)

001: MQTTGPASPD KPPPAVEPAE AEDKVEREGA QAKEEDEAAV VKAGGEDEED EEEEEEDGRG GKRQRRRAAG DSAVAMVKRD LLLRCLTCPL CDRLLRKATT
101: ISECLHTFCR KCIYKKLNDE DLDHCPVCNI DLGCTPVDKL RSKECLSSET QLNVSIGYLT KIVSLSSSCY SSDLGKNFSV FFGLLLVSLY RLPSYSNFLM
201: YGFRADHNIQ DVRSKVFPFK RKKVNAEEAE SPITLPVKVK ERSISSLVVN TPRVAPAAST RRRTRAVTRK AAALRGLGPI IVDPLKKDND NSNKQTDNSS
301: LLDSLSKIPQ TRRQLLSNGD TSGHPSVKDK AGDNKDLDKS ELWKPLNRLV DAASKTKALT SAQSPALKGD KPRESPSSEH SSRTEARESL QKSKAEDDKS
401: DDPEPIVLLR KRGRPARKRK DSLPETNAAS AATAIQARKA LSPIWFSLIA SFDQKGDPPL PQIPAHYLRI KDGSIPASSI QRYIMQKLSL LSESEVEIRC
501: CGQTVNLGQP VRNLVERWLR VGPARPLHTV IGSSGGDYVM VISYGRPKSV SS

Best Arabidopsis Sequence Match ( AT2G30580.2 )
(BLAST)

001: MEGDMVAKVK RETVVACMTC PLCDKLLRDA TTISECLHTF CRKCIYEKIT EDEIESCPVC DIDLGGTPLE KLRPDHILQD LRAKLFPLKR KKERAPEVVS
101: SISLPAKRKE RSISSLVVST PRVSAQAGTT GKRTKAATRK DVRGSGSFTK RTVKKEEEFG DDHVESASSP ETLKKFTQNK RQSSYANPNQ SLSNRRNKDV
201: DEPWDSKLHL WKPLNFLVDV ANGTKDPKSE LGNASHNDVQ GSKTKTKDHK RKCKLEEEIS NNGDPTTSET ATLKRTRRTR RKRSSTFGDS RIPLLPGAAS
301: LKQERRNGHV WFSLVASSNQ EGEASLPQIP ANYLRIRDGN IPVSFIQKYL MRKLDLKSED EVEITCMGEP VIPTLQLHSL VDLWLETTSK HQRVAASIGS
401: SAKEFVMVLV YSRKLPECNN

Arabidopsis Description

DRIP2DRIP2 [Source:UniProtKB/TrEMBL;Acc:A0A178VRI3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.