Factsheet for TraesCS5A01G058000.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G221900.1
TraesCS1B01G235100.2
TraesCS1D01G223600.2
TraesCS2A01G229600.2
TraesCS2A01G282200.1
TraesCS2A01G292600.1
TraesCS2B01G251300.1
TraesCS2B01G299400.1
TraesCS2B01G309000.1
TraesCS2D01G233500.1
TraesCS2D01G281000.1
TraesCS2D01G290400.1
TraesCS3B01G358800.1
TraesCS3D01G322300.1
TraesCS5A01G194900.2
TraesCS5B01G190300.1
TraesCS5D01G198100.1
TraesCS7A01G134600.1
TraesCS7B01G035800.1
TraesCS7D01G134000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G06770.1	TraesCS1A01G221900.1	AT5G05410.1	18552202
AT1G06770.1	TraesCS1B01G235100.2	AT5G05410.1	18552202
AT1G06770.1	TraesCS1D01G223600.2	AT5G05410.1	18552202
AT2G30580.1	TraesCS2A01G229600.2	AT1G30860.1	21798944
AT2G30580.1	TraesCS2B01G251300.1	AT1G30860.1	21798944
AT2G30580.1	TraesCS2D01G233500.1	AT1G30860.1	21798944
AT2G30580.1	TraesCS5A01G194900.2	AT2G46550.1	21798944
AT2G30580.1	TraesCS5B01G190300.1	AT2G46550.1	21798944
AT2G30580.1	TraesCS5D01G198100.1	AT2G46550.1	21798944
AT2G30580.1	TraesCS2A01G292600.1	AT3G09980.1	21798944
AT2G30580.1	TraesCS2B01G309000.1	AT3G09980.1	21798944
AT2G30580.1	TraesCS2D01G290400.1	AT3G09980.1	21798944
AT2G30580.1	TraesCS1A01G221900.1	AT5G05410.1	18552202
AT2G30580.1	TraesCS1B01G235100.2	AT5G05410.1	18552202
AT2G30580.1	TraesCS1D01G223600.2	AT5G05410.1	18552202
AT2G30580.1	TraesCS2A01G282200.1	AT5G22310.1	21798944
AT2G30580.1	TraesCS2B01G299400.1	AT5G22310.1	21798944
AT2G30580.1	TraesCS2D01G281000.1	AT5G22310.1	21798944
AT2G30580.1	TraesCS7A01G134600.1	AT5G22310.1	21798944
AT2G30580.1	TraesCS7B01G035800.1	AT5G22310.1	21798944
AT2G30580.1	TraesCS7D01G134000.1	AT5G22310.1	21798944
AT3G23060.1	TraesCS3B01G358800.1	AT5G45490.1	21798944
AT3G23060.1	TraesCS3D01G322300.1	AT5G45490.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G069800.1	Wheat	nucleus	99.15	99.15
TraesCS5B01G065600.1	Wheat	cytosol	96.61	96.61
HORVU5Hr1G014430.6	Barley	nucleus	87.92	87.55
Os12t0600200-03	Rice	cytosol, nucleus	46.61	63.95
Zm00001d030985_P001	Maize	nucleus	56.14	55.67
Zm00001d041405_P001	Maize	nucleus	56.99	55.35
OQU79520	Sorghum	nucleus	59.11	50.54
TraesCS5A01G378600.1	Wheat	nucleus	48.73	45.28
GSMUA_Achr9P10710_001	Banana	nucleus	37.92	44.97
Solyc09g065990.2.1	Tomato	nucleus	38.56	42.33
PGSC0003DMT400038984	Potato	nucleus	38.14	41.86
VIT_07s0141g00610.t01	Wine grape	nucleus	37.5	41.16
GSMUA_Achr4P17750_001	Banana	nucleus	33.69	40.87
Solyc06g084040.2.1	Tomato	nucleus	37.29	40.84
KRG95629	Soybean	nucleus	36.44	40.19
Solyc06g008600.2.1	Tomato	nucleus	35.38	39.95
AT2G30580.1	Thale cress	nucleus	35.38	39.76
GSMUA_Achr5P03230_001	Banana	nucleus	36.86	39.55
KRH67309	Soybean	nucleus	36.86	39.1
CDX97807	Canola	nucleus	34.32	38.94
PGSC0003DMT400051660	Potato	nucleus	37.29	38.94
VIT_14s0081g00070.t01	Wine grape	nucleus	36.86	38.75
CDY29659	Canola	nucleus	34.53	38.72
AT1G06770.1	Thale cress	nucleus	34.32	38.48
CDY47131	Canola	nucleus	33.69	38.13
CDY10748	Canola	nucleus	33.9	38.0
KRG92687	Soybean	nucleus	34.53	37.64
KRH32110	Soybean	nucleus	33.9	37.3
KRH34095	Soybean	nucleus	34.11	37.27
KRH71326	Soybean	mitochondrion, nucleus	33.9	37.12
Bra018304.1-P	Field mustard	nucleus	33.69	36.81
TraesCS5A01G443000.1	Wheat	nucleus	30.93	36.23
CDY23989	Canola	nucleus	32.42	35.66
VIT_05s0020g04730.t01	Wine grape	nucleus	35.38	35.23
TraesCS5A01G381800.1	Wheat	mitochondrion	27.75	34.93
Bra015526.1-P	Field mustard	nucleus	18.01	34.69
PGSC0003DMT400013629	Potato	nucleus	20.76	33.45
Bra021651.1-P	Field mustard	nucleus	24.79	33.24
CDY06664	Canola	nucleus	25.64	31.59
Bra022807.1-P	Field mustard	cytosol	4.66	31.43
Bra015525.1-P	Field mustard	cytosol	25.0	28.16
Solyc01g020110.1.1	Tomato	endoplasmic reticulum	8.9	28.0
PGSC0003DMT400087291	Potato	nucleus	18.01	27.33
CDY61240	Canola	nucleus	10.38	27.22
KRG92425	Soybean	nucleus	24.36	27.0
KRH34379	Soybean	nucleus	24.15	26.15
CDX94870	Canola	nucleus	21.61	22.72
CDX92974	Canola	cytosol	21.4	21.81
Solyc09g083300.1.1	Tomato	nucleus, plastid	12.29	21.72
Bra001901.1-P	Field mustard	nucleus	20.97	21.38
PGSC0003DMT400087288	Potato	plastid	7.42	21.08
AT3G23060.1	Thale cress	nucleus	21.4	21.04
PGSC0003DMT400010761	Potato	nucleus	21.82	20.85
Solyc09g083310.1.1	Tomato	nucleus	15.89	18.75
PGSC0003DMT400015657	Potato	nucleus, plastid	14.83	17.72

Protein Annotations

EnsemblPlants:TraesCS5A01G058000.1	EnsemblPlantsGene:TraesCS5A01G058000	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_RING_CS	PANTHER:PTHR10825	PANTHER:PTHR10825:SF47	PFAM:PF13923	PFscan:PS50089
ScanProsite:PS00518	SEG:seg	SMART:SM00184	SUPFAM:SSF57850	MapMan:12.3.5.1.1.1	:

Description

No Description!

Coordinates

chr5A:-:55655270..55660606

Molecular Weight (calculated)

51553.8 Da

IEP (calculated)

10.244

GRAVY (calculated)

-0.624

Length

472 amino acids

Sequence
(BLAST)

001: MQSGPASPAP PEDTPMAAAA AVAEVEVMEE ADGEQAKEDA VKVAEAQADR GVKRGRGRPR RRPVAVEGSG VVMVKREQLA RCMTCQLCHR LLRNAATISE
101: CLHTFCRKCI YKKLNDEECD HCPVCKIDLG CTPIEKLRAD HNKQDVRSKI FPLKRNKIGA KESPVTLPIK RKERSISSLV VDTPRITTGL TGRRTRAVTR
201: KAAAALRGLG PILDPVERDN GSANKHPDNL SLLDSLSKVP QTRRKASSIA ETSSHNSNKD KAGDDKDLDK ADLWKPLNCL VEAASKTKSF RSSPSVKGDQ
301: PNGSPSSEHA SKEKPVENLR KTRFQDDKKD APQPVMLKKK GTGRTKNATS VAAASQKAQN SRALNPVWFS LIASFEQKGV PPLPQIPAHY LRIKDGSIAA
401: SSIQRYIMQK LSLGSESEVE LSCCGQSINP IQPVHNLMDR WLRVGPSRHL QTSVGSSGGE YVMVITYGRP KS

Best Arabidopsis Sequence Match ( AT2G30580.2 )
(BLAST)

001: MEGDMVAKVK RETVVACMTC PLCDKLLRDA TTISECLHTF CRKCIYEKIT EDEIESCPVC DIDLGGTPLE KLRPDHILQD LRAKLFPLKR KKERAPEVVS
101: SISLPAKRKE RSISSLVVST PRVSAQAGTT GKRTKAATRK DVRGSGSFTK RTVKKEEEFG DDHVESASSP ETLKKFTQNK RQSSYANPNQ SLSNRRNKDV
201: DEPWDSKLHL WKPLNFLVDV ANGTKDPKSE LGNASHNDVQ GSKTKTKDHK RKCKLEEEIS NNGDPTTSET ATLKRTRRTR RKRSSTFGDS RIPLLPGAAS
301: LKQERRNGHV WFSLVASSNQ EGEASLPQIP ANYLRIRDGN IPVSFIQKYL MRKLDLKSED EVEITCMGEP VIPTLQLHSL VDLWLETTSK HQRVAASIGS
401: SAKEFVMVLV YSRKLPECNN

Arabidopsis Description

DRIP2DRIP2 [Source:UniProtKB/TrEMBL;Acc:A0A178VRI3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.