Factsheet for PGSC0003DMT400038984

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400007017
PGSC0003DMT400015076
PGSC0003DMT400022249
PGSC0003DMT400029374
PGSC0003DMT400030287
PGSC0003DMT400035458
PGSC0003DMT400042946
PGSC0003DMT400047670
PGSC0003DMT400067737
PGSC0003DMT400070968
PGSC0003DMT400072397

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G30580.1	PGSC0003DMT400029374	AT1G30860.1	21798944
AT2G30580.1	PGSC0003DMT400035458	AT1G30860.1	21798944
AT2G30580.1	PGSC0003DMT400042946	AT2G40620.1	21798944
AT2G30580.1	PGSC0003DMT400070968	AT2G40620.1	21798944
AT2G30580.1	PGSC0003DMT400047670	AT2G46550.1	21798944
AT2G30580.1	PGSC0003DMT400007017	AT3G09980.1	21798944
AT2G30580.1	PGSC0003DMT400072397	AT3G09980.1	21798944
AT2G30580.1	PGSC0003DMT400022249	AT4G13540.1	21798944
AT2G30580.1	PGSC0003DMT400030287	AT4G13540.1	21798944
AT2G30580.1	PGSC0003DMT400015076	AT5G22310.1	21798944
AT2G30580.1	PGSC0003DMT400067737	AT5G22310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g065990.2.1	Tomato	nucleus	95.35	95.35
PGSC0003DMT400051660	Potato	nucleus	74.19	70.58
VIT_07s0141g00610.t01	Wine grape	nucleus	69.3	69.3
PGSC0003DMT400013629	Potato	nucleus	45.35	66.55
KRG95629	Soybean	nucleus	62.56	62.85
Bra022807.1-P	Field mustard	cytosol	10.0	61.43
KRH67309	Soybean	nucleus	62.33	60.22
CDY47131	Canola	nucleus	54.19	55.88
CDY10748	Canola	nucleus	53.95	55.11
KRH32110	Soybean	nucleus	54.65	54.78
AT2G30580.1	Thale cress	nucleus	53.49	54.76
KRH71326	Soybean	mitochondrion, nucleus	53.95	53.83
AT1G06770.1	Thale cress	nucleus	52.33	53.44
Bra018304.1-P	Field mustard	nucleus	53.02	52.78
CDX97807	Canola	nucleus	50.7	52.4
CDY29659	Canola	nucleus	50.23	51.31
GSMUA_Achr9P10710_001	Banana	nucleus	47.44	51.26
Bra021651.1-P	Field mustard	nucleus	40.0	48.86
CDY23989	Canola	nucleus	47.91	48.02
Os03t0741700-00	Rice	cytosol	20.93	46.88
GSMUA_Achr5P03230_001	Banana	nucleus	47.44	46.36
GSMUA_Achr4P17750_001	Banana	nucleus	41.86	46.27
Os12t0600200-03	Rice	cytosol, nucleus	31.86	39.83
Zm00001d041405_P001	Maize	nucleus	43.95	38.89
Zm00001d030985_P001	Maize	nucleus	43.02	38.87
TraesCS5A01G378600.1	Wheat	nucleus	45.35	38.39
TraesCS5D01G069800.1	Wheat	nucleus	42.09	38.35
TraesCS5A01G058000.1	Wheat	nucleus	41.86	38.14
TraesCS5D01G388500.1	Wheat	nucleus	46.05	38.08
TraesCS5B01G382100.1	Wheat	nucleus	45.58	37.98
HORVU5Hr1G014430.6	Barley	nucleus	41.86	37.97
Os03t0632800-01	Rice	nucleus	38.14	37.96
CDY06664	Canola	nucleus	33.72	37.86
HORVU5Hr1G093720.3	Barley	nucleus	45.81	37.81
TraesCS5B01G065600.1	Wheat	cytosol	41.4	37.71
KXG37982	Sorghum	nucleus	44.88	37.4
Zm00001d033322_P001	Maize	nucleus	45.58	37.26
Bra015526.1-P	Field mustard	nucleus	20.7	36.33
TraesCS5D01G391100.1	Wheat	mitochondrion	29.77	34.13
TraesCS5A01G381800.1	Wheat	mitochondrion	29.77	34.13
OQU79520	Sorghum	nucleus	43.49	33.88
Bra015525.1-P	Field mustard	cytosol	32.33	33.17
TraesCS5B01G385300.1	Wheat	mitochondrion	30.23	32.5
Zm00001d013303_P001	Maize	nucleus	29.3	32.39
PGSC0003DMT400087291	Potato	nucleus	22.56	31.19
KXG37592	Sorghum	mitochondrion, nucleus	35.12	30.94
Zm00001d033967_P001	Maize	nucleus	27.21	30.63
HORVU5Hr1G094160.2	Barley	plastid	29.53	28.67
PGSC0003DMT400087288	Potato	plastid	9.77	25.3
PGSC0003DMT400010761	Potato	nucleus	28.37	24.7
PGSC0003DMT400015657	Potato	nucleus, plastid	20.47	22.28

Protein Annotations

EntrezGene:102584850	MapMan:12.3.5.1.1.1	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083	UniProt:M1B7N1
PFAM:PF13923	EnsemblPlantsGene:PGSC0003DMG400015075	PGSC:PGSC0003DMG400015075	EnsemblPlants:PGSC0003DMT400038984	ScanProsite:PS00518	PFscan:PS50089
PANTHER:PTHR10825	PANTHER:PTHR10825:SF42	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI0002958FF3	RefSeq:XP_006351631.1
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_RING_CS	SEG:seg	:	:

Description

Ring finger protein [Source:PGSC_GENE;Acc:PGSC0003DMG400015075]

Coordinates

chr9:+:49104735..49114158

Molecular Weight (calculated)

48247.7 Da

IEP (calculated)

9.775

GRAVY (calculated)

-0.620

Length

430 amino acids

Sequence
(BLAST)

001: MTNQLVKVKR DVIAACMTCP LCHKLFRDAT TISECLHTFC RKCIYKKLSN EETEHCPICN IDLGCVPLEK LRPDHNLQDV RAKVFPYKRR KVNAPEIVTS
101: VALPVRRKER SLSSLVVSTP RVSSQTGITG RRTKSVARKT LRGSNFSIEK SLKKEEGSGE DQLDSSSSLE TLNKFTQNIR LNSSSAEPSN HPTPDKETEN
201: GSQQWEGKVD LWKPLNCLVE AANRSKSLRF TSHGSTAKSE GLHSHDREGH VRKTKVKEHG QKSKIKDDNN SDPAPPEFDK PKKSRRIRQK KASFYGEFDI
301: SPQTVLDATT ARCERRIYPI WFSLVASEDQ EGDAPLPQIS ASYLRIKDGN IPVSFIQKYL MRKLDLKSED EVEIRCMGQA IAPSLPLNSL VDMWLQTTPS
401: ERIPAIIGSS AKDFVMALAY ARKIPGVPAS

Best Arabidopsis Sequence Match ( AT2G30580.2 )
(BLAST)

001: MEGDMVAKVK RETVVACMTC PLCDKLLRDA TTISECLHTF CRKCIYEKIT EDEIESCPVC DIDLGGTPLE KLRPDHILQD LRAKLFPLKR KKERAPEVVS
101: SISLPAKRKE RSISSLVVST PRVSAQAGTT GKRTKAATRK DVRGSGSFTK RTVKKEEEFG DDHVESASSP ETLKKFTQNK RQSSYANPNQ SLSNRRNKDV
201: DEPWDSKLHL WKPLNFLVDV ANGTKDPKSE LGNASHNDVQ GSKTKTKDHK RKCKLEEEIS NNGDPTTSET ATLKRTRRTR RKRSSTFGDS RIPLLPGAAS
301: LKQERRNGHV WFSLVASSNQ EGEASLPQIP ANYLRIRDGN IPVSFIQKYL MRKLDLKSED EVEITCMGEP VIPTLQLHSL VDLWLETTSK HQRVAASIGS
401: SAKEFVMVLV YSRKLPECNN

Arabidopsis Description

DRIP2DRIP2 [Source:UniProtKB/TrEMBL;Acc:A0A178VRI3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.