Factsheet for Os12t0600200-03

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0798900-00
Os02t0506100-00
Os02t0528100-01
Os03t0107500-00
Os04t0382800-00
Os04t0408600-01
Os07t0499800-01
Os08t0400300-01
Os09t0363500-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G30580.1	Os03t0107500-00	AT1G30860.1	21798944
AT2G30580.1	Os07t0499800-01	AT1G30860.1	21798944
AT2G30580.1	Os08t0400300-01	AT2G46550.1	21798944
AT2G30580.1	Os09t0363500-01	AT2G46550.1	21798944
AT2G30580.1	Os02t0528100-01	AT3G09980.1	21798944
AT2G30580.1	Os04t0408600-01	AT3G09980.1	21798944
AT2G30580.1	Os02t0506100-00	AT5G22310.1	21798944
AT2G30580.1	Os04t0382800-00	AT5G22310.1	21798944
AT3G23060.1	Os01t0798900-00	AT5G45490.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G069800.1	Wheat	nucleus	63.95	46.61
TraesCS5A01G058000.1	Wheat	nucleus	63.95	46.61
HORVU5Hr1G014430.6	Barley	nucleus	63.95	46.41
Zm00001d030985_P001	Maize	nucleus	63.37	45.8
TraesCS5B01G065600.1	Wheat	cytosol	62.79	45.76
Zm00001d041405_P001	Maize	nucleus	64.24	45.47
OQU79520	Sorghum	nucleus	66.28	41.3
Bra021651.1-P	Field mustard	nucleus	36.63	35.8
Bra022807.1-P	Field mustard	cytosol	7.27	35.71
PGSC0003DMT400013629	Potato	nucleus	29.65	34.81
VIT_07s0141g00610.t01	Wine grape	nucleus	41.86	33.49
KRG95629	Soybean	nucleus	40.41	32.48
GSMUA_Achr9P10710_001	Banana	nucleus	36.92	31.91
PGSC0003DMT400038984	Potato	nucleus	39.83	31.86
Solyc09g065990.2.1	Tomato	nucleus	39.83	31.86
Os03t0632800-01	Rice	nucleus	39.83	31.71
KRH67309	Soybean	nucleus	40.99	31.69
AT2G30580.1	Thale cress	nucleus	38.66	31.67
AT1G06770.1	Thale cress	nucleus	38.66	31.59
CDY23989	Canola	nucleus	38.95	31.24
Solyc06g008600.2.1	Tomato	nucleus	37.79	31.1
VIT_14s0081g00070.t01	Wine grape	nucleus	40.41	30.96
CDY47131	Canola	nucleus	37.5	30.94
KRG92687	Soybean	nucleus	38.66	30.72
Solyc06g084040.2.1	Tomato	nucleus	38.37	30.63
CDX97807	Canola	nucleus	36.92	30.53
GSMUA_Achr5P03230_001	Banana	nucleus	38.66	30.23
CDY29659	Canola	nucleus	36.92	30.17
KRH34095	Soybean	nucleus	37.79	30.09
GSMUA_Achr4P17750_001	Banana	nucleus	34.01	30.08
CDY10748	Canola	nucleus	36.63	29.93
Bra018304.1-P	Field mustard	nucleus	37.21	29.63
PGSC0003DMT400051660	Potato	nucleus	38.66	29.42
KRH32110	Soybean	nucleus	35.76	28.67
KRH71326	Soybean	mitochondrion, nucleus	34.3	27.38
Os03t0798200-01	Rice	nucleus	30.52	27.27
VIT_05s0020g04730.t01	Wine grape	nucleus	36.63	26.58
Bra015526.1-P	Field mustard	nucleus	18.6	26.12
CDY06664	Canola	nucleus	29.07	26.11
CDY61240	Canola	nucleus	13.37	25.56
Solyc01g020110.1.1	Tomato	endoplasmic reticulum	10.47	24.0
Bra015525.1-P	Field mustard	cytosol	28.49	23.39
PGSC0003DMT400087291	Potato	nucleus	20.93	23.15
Os03t0741700-00	Rice	cytosol	11.92	21.35
Solyc09g083300.1.1	Tomato	nucleus, plastid	15.41	19.85
KRG92425	Soybean	nucleus	24.42	19.72
KRH34379	Soybean	nucleus	24.13	19.04
Solyc09g083310.1.1	Tomato	nucleus	21.8	18.75
PGSC0003DMT400010761	Potato	nucleus	26.45	18.42
PGSC0003DMT400087288	Potato	plastid	8.72	18.07
PGSC0003DMT400015657	Potato	nucleus, plastid	20.35	17.72
Bra001901.1-P	Field mustard	nucleus	22.67	16.85
CDX92974	Canola	cytosol	21.22	15.77
CDX94870	Canola	nucleus	20.06	15.37
AT3G23060.1	Thale cress	nucleus	20.93	15.0

Protein Annotations

EnsemblPlants:Os12t0600200-03	EnsemblPlantsGene:Os12g0600200	PANTHER:PTHR10825	PANTHER:PTHR10825:SF47	ProteinID:BAT17950.1	SEG:seg
UniParc:UPI000393AF79	UniProt:A0A0P0YBX7	MapMan:12.3.5.1.1.1	:	:	:

Description

Similar to Zinc finger, C3HC4 type family protein, expressed. (Os12t0600200-01);Similar to Zinc finger, C3HC4 type (RING finger) containing protein. (Os12t0600200-02);Similar to Zinc finger, C3HC4 type (RING finger) containing protein. (Os12t0600200-03)

Coordinates

chr12:-:25247754..25250814

Molecular Weight (calculated)

37709.9 Da

IEP (calculated)

10.755

GRAVY (calculated)

-0.729

Length

344 amino acids

Sequence
(BLAST)

001: RADHNIQDVR SKIFPLKRKK VNAEEVESPI APPAKRKERS ISSLVVNTPE ITPKSLTGRR TRASTRKSAA ALRDLGPIIP PVKKDSDNTN KNADNSSLLD
101: SLSKVPQTRR QVLSNAETSS HPSSKDKGGD DKDLDKSELW RPLNCLVEAA SKTKSYRSSS AARGNQPTES PSSANASRTK AREYLLKSKV QDEKKEVPVA
201: TVPFKRKGPG RGRKPAQPPA AAVSSHSASK HEKLLTPVWF SLIASFDQKG APPLPQIPTH YLRIKDDNMP ASSIQKYIMQ KLSLPSETEV EISCCGQPVN
301: PIQPLRNLIE RWLRFGPART LQTVVGSSGG DYVMVISYGR PKAA

Best Arabidopsis Sequence Match ( AT2G30580.2 )
(BLAST)

001: MEGDMVAKVK RETVVACMTC PLCDKLLRDA TTISECLHTF CRKCIYEKIT EDEIESCPVC DIDLGGTPLE KLRPDHILQD LRAKLFPLKR KKERAPEVVS
101: SISLPAKRKE RSISSLVVST PRVSAQAGTT GKRTKAATRK DVRGSGSFTK RTVKKEEEFG DDHVESASSP ETLKKFTQNK RQSSYANPNQ SLSNRRNKDV
201: DEPWDSKLHL WKPLNFLVDV ANGTKDPKSE LGNASHNDVQ GSKTKTKDHK RKCKLEEEIS NNGDPTTSET ATLKRTRRTR RKRSSTFGDS RIPLLPGAAS
301: LKQERRNGHV WFSLVASSNQ EGEASLPQIP ANYLRIRDGN IPVSFIQKYL MRKLDLKSED EVEITCMGEP VIPTLQLHSL VDLWLETTSK HQRVAASIGS
401: SAKEFVMVLV YSRKLPECNN

Arabidopsis Description

DRIP2DRIP2 [Source:UniProtKB/TrEMBL;Acc:A0A178VRI3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.