CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70151
CDX70996
CDX79976
CDX80028
CDX88802
CDX92367
CDX93167
CDX98843
CDY00898
CDY01136
CDY02344
CDY04950
CDY06974
CDY09519
CDY12454
CDY17934
CDY23889
CDY25859
CDY27317
CDY27436
CDY32440
CDY47363
CDY52149
CDY52188
CDY56879
CDY60156
CDY61731
CDY67997
CDY70153
CDY71050

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G30580.1	CDY02344	AT1G30860.1	21798944
AT2G30580.1	CDY09519	AT1G30860.1	21798944
AT2G30580.1	CDY12454	AT1G30860.1	21798944
AT2G30580.1	CDY52188	AT1G30860.1	21798944
AT2G30580.1	CDX79976	AT2G40620.1	21798944
AT2G30580.1	CDX93167	AT2G40620.1	21798944
AT2G30580.1	CDY06974	AT2G40620.1	21798944
AT2G30580.1	CDY23889	AT2G40620.1	21798944
AT2G30580.1	CDX80028	AT2G46550.1	21798944
AT2G30580.1	CDY27317	AT2G46550.1	21798944
AT2G30580.1	CDY56879	AT2G46550.1	21798944
AT2G30580.1	CDY61731	AT2G46550.1	21798944
AT2G30580.1	CDY00898	AT3G09980.1	21798944
AT2G30580.1	CDY17934	AT3G09980.1	21798944
AT2G30580.1	CDY25859	AT3G09980.1	21798944
AT2G30580.1	CDY27436	AT3G09980.1	21798944
AT2G30580.1	CDY32440	AT3G09980.1	21798944
AT2G30580.1	CDY60156	AT3G09980.1	21798944
AT2G30580.1	CDY70153	AT3G09980.1	21798944
AT2G30580.1	CDY71050	AT3G09980.1	21798944
AT2G30580.1	CDY01136	AT4G13540.1	21798944
AT2G30580.1	CDY47363	AT4G13540.1	21798944
AT2G30580.1	CDX70151	AT5G05410.1	18552202
AT2G30580.1	CDX98843	AT5G05410.1	18552202
AT2G30580.1	CDY04950	AT5G05410.1	18552202
AT2G30580.1	CDY52149	AT5G05410.1	18552202
AT2G30580.1	CDX70996	AT5G22310.1	21798944
AT2G30580.1	CDX88802	AT5G22310.1	21798944
AT2G30580.1	CDX92367	AT5G22310.1	21798944
AT2G30580.1	CDY67997	AT5G22310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX97807	Canola	nucleus	94.06	95.19
Bra021651.1-P	Field mustard	nucleus	78.15	93.47
CDY47131	Canola	nucleus	78.15	78.9
CDY10748	Canola	nucleus	78.86	78.86
CDY23989	Canola	nucleus	79.33	77.86
AT2G30580.1	Thale cress	nucleus	76.25	76.43
VIT_07s0141g00610.t01	Wine grape	nucleus	54.87	53.72
PGSC0003DMT400038984	Potato	nucleus	51.31	50.23
Solyc06g008600.2.1	Tomato	nucleus	49.41	49.76
Solyc09g065990.2.1	Tomato	nucleus	50.59	49.53
KRG95629	Soybean	nucleus	50.12	49.3
KRH67309	Soybean	nucleus	51.78	48.99
Solyc06g084040.2.1	Tomato	nucleus	49.88	48.72
GSMUA_Achr9P10710_001	Banana	nucleus	44.18	46.73
PGSC0003DMT400051660	Potato	nucleus	50.12	46.68
KRH71326	Soybean	mitochondrion, nucleus	47.51	46.4
KRH32110	Soybean	nucleus	46.32	45.45
CDY06664	Canola	nucleus	40.62	44.65
Os03t0741700-00	Rice	cytosol	20.19	44.27
PGSC0003DMT400013629	Potato	nucleus	30.17	43.34
GSMUA_Achr4P17750_001	Banana	nucleus	38.48	41.65
GSMUA_Achr5P03230_001	Banana	nucleus	43.23	41.36
Os12t0600200-03	Rice	cytosol, nucleus	30.17	36.92
TraesCS5B01G382100.1	Wheat	nucleus	45.13	36.82
TraesCS5D01G388500.1	Wheat	nucleus	44.89	36.35
TraesCS5A01G378600.1	Wheat	nucleus	43.71	36.22
HORVU5Hr1G093720.3	Barley	nucleus	44.42	35.89
KXG37982	Sorghum	nucleus	43.94	35.85
TraesCS5A01G381800.1	Wheat	mitochondrion	31.83	35.73
TraesCS5D01G391100.1	Wheat	mitochondrion	31.83	35.73
Zm00001d030985_P001	Maize	nucleus	39.43	34.87
Zm00001d041405_P001	Maize	nucleus	39.91	34.57
TraesCS5A01G058000.1	Wheat	nucleus	38.72	34.53
TraesCS5D01G069800.1	Wheat	nucleus	38.72	34.53
Zm00001d033322_P001	Maize	nucleus	42.52	34.03
TraesCS5B01G385300.1	Wheat	mitochondrion	32.3	34.0
TraesCS5B01G065600.1	Wheat	cytosol	37.77	33.69
Os03t0632800-01	Rice	nucleus	34.2	33.33
HORVU5Hr1G014430.6	Barley	nucleus	37.29	33.12
OQU79520	Sorghum	nucleus	39.67	30.25
Zm00001d013303_P001	Maize	nucleus	27.55	29.82
KXG37592	Sorghum	mitochondrion, nucleus	34.44	29.71
HORVU5Hr1G094160.2	Barley	plastid	30.88	29.35
Zm00001d033967_P001	Maize	nucleus	26.13	28.8
CDY61240	Canola	nucleus	11.4	26.67
CDX94870	Canola	nucleus	26.6	24.94
CDX92974	Canola	cytosol	26.37	23.97

Protein Annotations

EnsemblPlants:CDY29659	EnsemblPlantsGene:GSBRNA2T00043421001	Gene3D:3.30.40.10	GO:A0A078GWX9	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_RING_CS	PANTHER:PTHR10825	PANTHER:PTHR10825:SF42	PFAM:PF13923
PFscan:PS50089	ProteinID:CDY29659	ProteinID:CDY29659.1	ScanProsite:PS00518	SEG:seg	SMART:SM00184
SUPFAM:SSF57850	UniParc:UPI0004EF2840	UniProt:A0A078GWX9	MapMan:12.3.5.1.1.1	:	:

Description

BnaA04g17680DBnaA04g17680D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GWX9]

Coordinates

chrLK032241:-:171498..175442

Molecular Weight (calculated)

47431.7 Da

IEP (calculated)

9.651

GRAVY (calculated)

-0.751

Length

421 amino acids

Sequence
(BLAST)

001: MEGEMEMVGK VKREKVVACM TCSLCDNLLR DATTISECLH TFCRKCIYEK ITEDEIECCP VCDIDLGGTP LEKLRPDHIL QDLRAKIFPL KRKRDKDLEI
101: TLPARRKERS ISSLVVNTPR VSAQTGTTGK RTTKSLMRKD ARGSGSFTKR AVKKEGDHHT ESASSPETLK KFTQKKRQSP YAEANQSVSN RRNKDVAEPW
201: DSLHLINFLV DVANGTKPSS SSQGLDPNSE HGNASHIDVQ GNKTKTKDHK RKCKLEEEIS TNGDPTTTET GTVKRTRRTR RKRSSAFGDP RTPPLPDAET
301: LKQERRNGPV WFSLVASNNQ EGETSLPQIP ANYLRIRDGN IPVSFIQKYL MRKLDLKSET EVEIRCMGEP VIPTLQLHSL VELWLQTTTS KHERVTASIG
401: SSAKEFVMVL VYARKLPECN N

Best Arabidopsis Sequence Match ( AT2G30580.2 )
(BLAST)

001: MEGDMVAKVK RETVVACMTC PLCDKLLRDA TTISECLHTF CRKCIYEKIT EDEIESCPVC DIDLGGTPLE KLRPDHILQD LRAKLFPLKR KKERAPEVVS
101: SISLPAKRKE RSISSLVVST PRVSAQAGTT GKRTKAATRK DVRGSGSFTK RTVKKEEEFG DDHVESASSP ETLKKFTQNK RQSSYANPNQ SLSNRRNKDV
201: DEPWDSKLHL WKPLNFLVDV ANGTKDPKSE LGNASHNDVQ GSKTKTKDHK RKCKLEEEIS NNGDPTTSET ATLKRTRRTR RKRSSTFGDS RIPLLPGAAS
301: LKQERRNGHV WFSLVASSNQ EGEASLPQIP ANYLRIRDGN IPVSFIQKYL MRKLDLKSED EVEITCMGEP VIPTLQLHSL VDLWLETTSK HQRVAASIGS
401: SAKEFVMVLV YSRKLPECNN

Arabidopsis Description

DRIP2DRIP2 [Source:UniProtKB/TrEMBL;Acc:A0A178VRI3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.