Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY47363 | Canola | nucleus | 96.21 | 95.75 |
| Bra032712.1-P | Field mustard | cytosol | 83.89 | 92.67 |
| AT4G13540.1 | Thale cress | nucleus | 81.52 | 81.9 |
| CDY45564 | Canola | nucleus | 57.35 | 53.54 |
| CDX77442 | Canola | nucleus | 56.87 | 52.63 |
| KRH15737 | Soybean | nucleus | 24.64 | 45.22 |
| KRH33541 | Soybean | nucleus | 41.23 | 38.5 |
| VIT_05s0077g00530.t01 | Wine grape | nucleus | 36.49 | 38.31 |
| Solyc09g091060.2.1 | Tomato | cytosol | 39.81 | 37.5 |
| KRG90296 | Soybean | nucleus | 40.28 | 37.28 |
| PGSC0003DMT400030287 | Potato | nucleus | 28.91 | 36.97 |
| GSMUA_Achr1P11070_001 | Banana | nucleus | 28.44 | 33.9 |
| PGSC0003DMT400022249 | Potato | cytosol | 35.55 | 33.48 |
| Solyc12g097060.1.1 | Tomato | cytosol | 35.55 | 33.48 |
Protein Annotations
| EnsemblPlants:CDY01136 | EnsemblPlantsGene:GSBRNA2T00111205001 | ncoils:Coil | PANTHER:PTHR37226 | ProteinID:CDY01136 | ProteinID:CDY01136.1 |
| SEG:seg | UniParc:UPI0004EE38FE | MapMan:35.2 | : | : | : |
Description
BnaA04g06830D
Coordinates
chrLK031924:+:385956..388428
Molecular Weight (calculated)
24930.0 Da
IEP (calculated)
10.679
GRAVY (calculated)
-1.233
Length
211 amino acids
Sequence
(BLAST)
(BLAST)
001: MGGSTSKQKR DTARRSIKGR SNEERRRPTR RELDEKERVI SALKMAETEW RKERKNLREE VKKLRQKMQE KEEAKAKQNE WEWVVEQMCL ERAVREEAVE
101: RWKQLYFAIK TELDDLIHTT YGETLRQKPH EGGAKNTVQE LRKEVKVREE TIETLKGRIA LMEKQRHGKE REIDLLRQSL RILGSSSGKN KAPSSAPKNL
201: PTFKTKFIAC K
101: RWKQLYFAIK TELDDLIHTT YGETLRQKPH EGGAKNTVQE LRKEVKVREE TIETLKGRIA LMEKQRHGKE REIDLLRQSL RILGSSSGKN KAPSSAPKNL
201: PTFKTKFIAC K
001: MGGSTSKDER NSSKRRIKVK ANEQRRRETR RELDEKERVI LALKMAETEW RKERKRLREE VKRLRQKMEE KEEGKAKQHE WEWVVEQMCL ERAVREEAVE
101: RWKQLYFAIK NELDDLIHTT YGEALRQKPQ EEVAKAVQEL RKEVKARGET IETLKGRINL MEKQQNGKER EIDLLRQSLR ILGGSSGKNK ALSSTTRNLT
201: VFKTKFIGCK
101: RWKQLYFAIK NELDDLIHTT YGEALRQKPQ EEVAKAVQEL RKEVKARGET IETLKGRINL MEKQQNGKER EIDLLRQSLR ILGGSSGKNK ALSSTTRNLT
201: VFKTKFIGCK
Arabidopsis Description
Golgin family A protein [Source:UniProtKB/TrEMBL;Acc:Q9T0H4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.