Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- golgi 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH33541 | Soybean | nucleus | 93.91 | 47.79 |
| KRG90296 | Soybean | nucleus | 93.04 | 46.93 |
| VIT_05s0077g00530.t01 | Wine grape | nucleus | 53.91 | 30.85 |
| Bra032712.1-P | Field mustard | cytosol | 45.22 | 27.23 |
| Solyc09g091060.2.1 | Tomato | cytosol | 50.43 | 25.89 |
| CDY47363 | Canola | nucleus | 46.09 | 25.0 |
| CDY01136 | Canola | nucleus | 45.22 | 24.64 |
| PGSC0003DMT400022249 | Potato | cytosol | 46.96 | 24.11 |
| Solyc12g097060.1.1 | Tomato | cytosol | 46.96 | 24.11 |
| Bra015024.1-P | Field mustard | nucleus | 46.96 | 23.89 |
| CDY45564 | Canola | nucleus | 46.96 | 23.89 |
| CDX77442 | Canola | nucleus | 46.96 | 23.68 |
| AT4G13540.1 | Thale cress | nucleus | 42.61 | 23.33 |
| AT3G23930.1 | Thale cress | nucleus | 45.22 | 23.21 |
| PGSC0003DMT400030287 | Potato | nucleus | 26.96 | 18.79 |
| GSMUA_Achr1P11070_001 | Banana | nucleus | 28.7 | 18.64 |
Protein Annotations
| EMBL:ACUP02008640 | EnsemblPlants:KRH15737 | EnsemblPlantsGene:GLYMA_14G108200 | ncoils:Coil | PANTHER:PTHR37226 | ProteinID:KRH15737 |
| ProteinID:KRH15737.1 | UniParc:UPI000233BC89 | UniProt:K7M646 | MapMan:35.2 | : | : |
Description
hypothetical protein
Coordinates
chr14:-:11824403..11825059
Molecular Weight (calculated)
13832.8 Da
IEP (calculated)
9.572
GRAVY (calculated)
-1.172
Length
115 amino acids
Sequence
(BLAST)
(BLAST)
001: MKEERARRDE AMEKWKQLYL AIKTELDELI QRTYDGDGLY WKVEENDIQM ENMKKELQEK EETIKALKTQ LLSMEKEKYK KEGEFDLLRQ SLRIMNGKKS
101: SIQTKDKLLK SKLGK
101: SIQTKDKLLK SKLGK
001: MGGCTSKQER RGVRSVKETS KDQSRGRRHL IKERDEREKV MFLQLKEAER EWRKERKKLR EEVRRLRKKL EEREEAKTTT TEEREYWKWV VEEMCVERAV
101: RDEAVEKWKQ LYLAIKNELD HLISHTTSSS GEAIMQRKLE EQEEEETEAK RVEVLRDEVR VKEETVETLE EQIVLMDRQK YEKEREIDLL RQSLRILGSK
201: KKKKTGSFAS MNLLILKTKC VECT
101: RDEAVEKWKQ LYLAIKNELD HLISHTTSSS GEAIMQRKLE EQEEEETEAK RVEVLRDEVR VKEETVETLE EQIVLMDRQK YEKEREIDLL RQSLRILGSK
201: KKKKTGSFAS MNLLILKTKC VECT
Arabidopsis Description
Troponin T, skeletal protein [Source:UniProtKB/TrEMBL;Acc:Q9LIR5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.