Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX77442 | Canola | nucleus | 73.21 | 71.93 |
| CDY45564 | Canola | nucleus | 72.32 | 71.68 |
| Bra015024.1-P | Field mustard | nucleus | 71.88 | 71.24 |
| AT4G13540.1 | Thale cress | nucleus | 51.34 | 54.76 |
| KRH15737 | Soybean | nucleus | 23.21 | 45.22 |
| VIT_05s0077g00530.t01 | Wine grape | nucleus | 36.61 | 40.8 |
| KRH33541 | Soybean | nucleus | 38.84 | 38.5 |
| KRG90296 | Soybean | nucleus | 38.84 | 38.16 |
| GSMUA_Achr1P11070_001 | Banana | nucleus | 27.68 | 35.03 |
| Solyc09g091060.2.1 | Tomato | cytosol | 34.82 | 34.82 |
| Solyc12g097060.1.1 | Tomato | cytosol | 34.38 | 34.38 |
| PGSC0003DMT400030287 | Potato | nucleus | 25.0 | 33.94 |
| PGSC0003DMT400022249 | Potato | cytosol | 33.48 | 33.48 |
Protein Annotations
| ArrayExpress:AT3G23930 | EMBL:AK117696 | EMBL:BT005146 | EnsemblPlants:AT3G23930.1 | EnsemblPlantsGene:AT3G23930 | EntrezGene:821976 |
| ncoils:Coil | PANTHER:PTHR37226 | PO:PO:0020100 | ProteinID:AEE76833.1 | ProteinID:BAB03010.1 | RefSeq:AT3G23930 |
| RefSeq:AT3G23930-TAIR-G | RefSeq:NP_189035.1 | SEG:seg | TAIR:AT3G23930 | TAIR:AT3G23930.1 | UniParc:UPI000000C55E |
| UniProt:Q9LIR5 | MapMan:35.2 | : | : | : | : |
Description
Troponin T, skeletal protein [Source:UniProtKB/TrEMBL;Acc:Q9LIR5]
Coordinates
chr3:+:8646746..8647947
Molecular Weight (calculated)
27000.5 Da
IEP (calculated)
9.158
GRAVY (calculated)
-1.157
Length
224 amino acids
Sequence
(BLAST)
(BLAST)
001: MGGCTSKQER RGVRSVKETS KDQSRGRRHL IKERDEREKV MFLQLKEAER EWRKERKKLR EEVRRLRKKL EEREEAKTTT TEEREYWKWV VEEMCVERAV
101: RDEAVEKWKQ LYLAIKNELD HLISHTTSSS GEAIMQRKLE EQEEEETEAK RVEVLRDEVR VKEETVETLE EQIVLMDRQK YEKEREIDLL RQSLRILGSK
201: KKKKTGSFAS MNLLILKTKC VECT
101: RDEAVEKWKQ LYLAIKNELD HLISHTTSSS GEAIMQRKLE EQEEEETEAK RVEVLRDEVR VKEETVETLE EQIVLMDRQK YEKEREIDLL RQSLRILGSK
201: KKKKTGSFAS MNLLILKTKC VECT
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.