Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400030287 | Potato | nucleus | 37.85 | 40.61 |
| VIT_05s0077g00530.t01 | Wine grape | nucleus | 39.55 | 34.83 |
| KRH33541 | Soybean | nucleus | 43.5 | 34.07 |
| KRG90296 | Soybean | nucleus | 42.94 | 33.33 |
| Solyc09g091060.2.1 | Tomato | cytosol | 38.98 | 30.8 |
| KRH15737 | Soybean | nucleus | 18.64 | 28.7 |
| PGSC0003DMT400022249 | Potato | cytosol | 36.16 | 28.57 |
| Solyc12g097060.1.1 | Tomato | cytosol | 36.16 | 28.57 |
| CDY01136 | Canola | nucleus | 33.9 | 28.44 |
| CDY47363 | Canola | nucleus | 33.9 | 28.3 |
| Bra032712.1-P | Field mustard | cytosol | 29.94 | 27.75 |
| AT3G23930.1 | Thale cress | nucleus | 35.03 | 27.68 |
| AT4G13540.1 | Thale cress | nucleus | 32.2 | 27.14 |
| Bra015024.1-P | Field mustard | nucleus | 33.9 | 26.55 |
| CDY45564 | Canola | nucleus | 33.9 | 26.55 |
| CDX77442 | Canola | nucleus | 33.9 | 26.32 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr1P11070_001 | EnsemblPlants:GSMUA_Achr1T11070_001 | EnsemblPlantsGene:GSMUA_Achr1G11070_001 | ncoils:Coil | PANTHER:PTHR37226 | SEG:seg |
| UniParc:UPI00029485AE | UniProt:M0RYW6 | MapMan:35.2 | : | : | : |
Description
Putative uncharacterized protein [Source:GMGC_GENE;Acc:GSMUA_Achr1G11070_001]
Coordinates
chr1:+:8477335..8478687
Molecular Weight (calculated)
21004.0 Da
IEP (calculated)
8.832
GRAVY (calculated)
-1.031
Length
177 amino acids
Sequence
(BLAST)
(BLAST)
001: MGGVTSKCSY AKHRKKTKEL RAKVLALEEE IKEMKRVREH EARAFERHAA AFASKEAEWE QERRKHREEA SKLGKRLKEE EDRIRCLEEE MAAGRGDKEW
101: FRLGTDYLVE HMKEEQARRE EAVEKWKQLY LAIKTELDDL IQRTRQGDRS SISVDIREEL VARPSRPFFC FPHFIAG
101: FRLGTDYLVE HMKEEQARRE EAVEKWKQLY LAIKTELDDL IQRTRQGDRS SISVDIREEL VARPSRPFFC FPHFIAG
001: MGGSTSKDER NSSKRRIKVK ANEQRRRETR RELDEKERVI LALKMAETEW RKERKRLREE VKRLRQKMEE KEEGKAKQHE WEWVVEQMCL ERAVREEAVE
101: RWKQLYFAIK NELDDLIHTT YGEALRQKPQ EEVAKAVQEL RKEVKARGET IETLKGRINL MEKQQNGKER EIDLLRQSLR ILGGSSGKNK ALSSTTRNLT
201: VFKTKFIGCK
101: RWKQLYFAIK NELDDLIHTT YGEALRQKPQ EEVAKAVQEL RKEVKARGET IETLKGRINL MEKQQNGKER EIDLLRQSLR ILGGSSGKNK ALSSTTRNLT
201: VFKTKFIGCK
Arabidopsis Description
Golgin family A protein [Source:UniProtKB/TrEMBL;Acc:Q9T0H4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.