Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRG90296 | Soybean | nucleus | 96.9 | 96.05 |
| KRH15737 | Soybean | nucleus | 47.79 | 93.91 |
| VIT_05s0077g00530.t01 | Wine grape | nucleus | 48.23 | 54.23 |
| PGSC0003DMT400030287 | Potato | nucleus | 32.74 | 44.85 |
| Solyc09g091060.2.1 | Tomato | cytosol | 44.25 | 44.64 |
| GSMUA_Achr1P11070_001 | Banana | nucleus | 34.07 | 43.5 |
| Solyc12g097060.1.1 | Tomato | cytosol | 42.04 | 42.41 |
| AT4G13540.1 | Thale cress | nucleus | 38.94 | 41.9 |
| Bra032712.1-P | Field mustard | cytosol | 35.4 | 41.88 |
| PGSC0003DMT400022249 | Potato | cytosol | 41.15 | 41.52 |
| CDY01136 | Canola | nucleus | 38.5 | 41.23 |
| CDY47363 | Canola | nucleus | 38.05 | 40.57 |
| Bra015024.1-P | Field mustard | nucleus | 40.27 | 40.27 |
| CDY45564 | Canola | nucleus | 40.27 | 40.27 |
| CDX77442 | Canola | nucleus | 39.38 | 39.04 |
| AT3G23930.1 | Thale cress | nucleus | 38.5 | 38.84 |
Protein Annotations
| EMBL:ACUP02006522 | EnsemblPlants:KRH33541 | EnsemblPlantsGene:GLYMA_10G130200 | ncoils:Coil | PANTHER:PTHR37226 | ProteinID:KRH33541 |
| ProteinID:KRH33541.1 | SEG:seg | UniParc:UPI00023CE17D | UniProt:I1LAN6 | MapMan:35.2 | : |
Description
hypothetical protein
Coordinates
chr10:-:35038914..35040559
Molecular Weight (calculated)
27305.2 Da
IEP (calculated)
9.631
GRAVY (calculated)
-1.158
Length
226 amino acids
Sequence
(BLAST)
(BLAST)
001: MGGSVSKSRR MSSEKYVMNL KEKVRLLQEE IKEMMYEREK ETRRYERDIM VFTFKEADSK QEGKRLREEV KQLRSLVEEK DEKIREIEVG MMEKNSEKEW
101: ELMGTKLLVE QMKEERARRD EAVEKWKQLY LAIKTELDEL IQRTYDGDGL YWKAEENGIQ MENLKKELQE KEETIKALKT QLLSMEKEKY KKEREFDLLR
201: QSLRIMNGKK NSIQTKEKLL KSKLGK
101: ELMGTKLLVE QMKEERARRD EAVEKWKQLY LAIKTELDEL IQRTYDGDGL YWKAEENGIQ MENLKKELQE KEETIKALKT QLLSMEKEKY KKEREFDLLR
201: QSLRIMNGKK NSIQTKEKLL KSKLGK
001: MGGSTSKDER NSSKRRIKVK ANEQRRRETR RELDEKERVI LALKMAETEW RKERKRLREE VKRLRQKMEE KEEGKAKQHE WEWVVEQMCL ERAVREEAVE
101: RWKQLYFAIK NELDDLIHTT YGEALRQKPQ EEVAKAVQEL RKEVKARGET IETLKGRINL MEKQQNGKER EIDLLRQSLR ILGGSSGKNK ALSSTTRNLT
201: VFKTKFIGCK
101: RWKQLYFAIK NELDDLIHTT YGEALRQKPQ EEVAKAVQEL RKEVKARGET IETLKGRINL MEKQQNGKER EIDLLRQSLR ILGGSSGKNK ALSSTTRNLT
201: VFKTKFIGCK
Arabidopsis Description
Golgin family A protein [Source:UniProtKB/TrEMBL;Acc:Q9T0H4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.