Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX77442 | Canola | nucleus | 96.46 | 95.61 |
| AT3G23930.1 | Thale cress | nucleus | 71.68 | 72.32 |
| CDY01136 | Canola | nucleus | 53.54 | 57.35 |
| CDY47363 | Canola | nucleus | 52.65 | 56.13 |
| KRH15737 | Soybean | nucleus | 23.89 | 46.96 |
| VIT_05s0077g00530.t01 | Wine grape | nucleus | 38.5 | 43.28 |
| KRH33541 | Soybean | nucleus | 40.27 | 40.27 |
| KRG90296 | Soybean | nucleus | 40.27 | 39.91 |
| Solyc09g091060.2.1 | Tomato | cytosol | 35.84 | 36.16 |
| PGSC0003DMT400022249 | Potato | cytosol | 34.51 | 34.82 |
| PGSC0003DMT400030287 | Potato | nucleus | 25.22 | 34.55 |
| Solyc12g097060.1.1 | Tomato | cytosol | 34.07 | 34.38 |
| GSMUA_Achr1P11070_001 | Banana | nucleus | 26.55 | 33.9 |
Protein Annotations
| EnsemblPlants:CDY45564 | EnsemblPlantsGene:GSBRNA2T00082279001 | ncoils:Coil | PANTHER:PTHR37226 | ProteinID:CDY45564 | ProteinID:CDY45564.1 |
| SEG:seg | UniParc:UPI0004EC3628 | UniProt:A0A078I831 | MapMan:35.2 | : | : |
Description
BnaC09g21460DBnaC09g21460D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I831]
Coordinates
chrLK032628:-:109887..110948
Molecular Weight (calculated)
26967.5 Da
IEP (calculated)
9.953
GRAVY (calculated)
-1.172
Length
226 amino acids
Sequence
(BLAST)
(BLAST)
001: MGGCTSKQER PSMRSVKKES STEKRRGRRH MRREVDEREK VMFDKLREAE REWGKERKKL REQVKRLRKK VEEREEAKTT TTEEREYWKW VVEEMCVERA
101: VRDEAVEKWK QLYLAIKNEL DHLIIHTTSS SSGEATMQRQ LEGKGEEEAV KTVEELRNEV RVKEDTIETL KEKIALMDRE KYEKEREIDI LRQSLRILGS
201: KKNKKKGASF ASMNLMILKT KCVECT
101: VRDEAVEKWK QLYLAIKNEL DHLIIHTTSS SSGEATMQRQ LEGKGEEEAV KTVEELRNEV RVKEDTIETL KEKIALMDRE KYEKEREIDI LRQSLRILGS
201: KKNKKKGASF ASMNLMILKT KCVECT
001: MGGCTSKQER RGVRSVKETS KDQSRGRRHL IKERDEREKV MFLQLKEAER EWRKERKKLR EEVRRLRKKL EEREEAKTTT TEEREYWKWV VEEMCVERAV
101: RDEAVEKWKQ LYLAIKNELD HLISHTTSSS GEAIMQRKLE EQEEEETEAK RVEVLRDEVR VKEETVETLE EQIVLMDRQK YEKEREIDLL RQSLRILGSK
201: KKKKTGSFAS MNLLILKTKC VECT
101: RDEAVEKWKQ LYLAIKNELD HLISHTTSSS GEAIMQRKLE EQEEEETEAK RVEVLRDEVR VKEETVETLE EQIVLMDRQK YEKEREIDLL RQSLRILGSK
201: KKKKTGSFAS MNLLILKTKC VECT
Arabidopsis Description
Troponin T, skeletal protein [Source:UniProtKB/TrEMBL;Acc:Q9LIR5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.