Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY01136 | Canola | nucleus | 95.75 | 96.21 |
| Bra032712.1-P | Field mustard | cytosol | 80.66 | 89.53 |
| AT4G13540.1 | Thale cress | nucleus | 79.72 | 80.48 |
| CDY45564 | Canola | nucleus | 56.13 | 52.65 |
| CDX77442 | Canola | nucleus | 55.66 | 51.75 |
| KRH15737 | Soybean | nucleus | 25.0 | 46.09 |
| KRH33541 | Soybean | nucleus | 40.57 | 38.05 |
| VIT_05s0077g00530.t01 | Wine grape | nucleus | 35.85 | 37.81 |
| KRG90296 | Soybean | nucleus | 40.09 | 37.28 |
| Solyc09g091060.2.1 | Tomato | cytosol | 39.15 | 37.05 |
| PGSC0003DMT400030287 | Potato | nucleus | 27.36 | 35.15 |
| PGSC0003DMT400022249 | Potato | cytosol | 36.32 | 34.38 |
| Solyc12g097060.1.1 | Tomato | cytosol | 36.32 | 34.38 |
| GSMUA_Achr1P11070_001 | Banana | nucleus | 28.3 | 33.9 |
Protein Annotations
| EnsemblPlants:CDY47363 | EnsemblPlantsGene:GSBRNA2T00087249001 | ncoils:Coil | PANTHER:PTHR37226 | ProteinID:CDY47363 | ProteinID:CDY47363.1 |
| SEG:seg | UniParc:UPI0004EE0C28 | UniProt:A0A078IDU8 | MapMan:35.2 | : | : |
Description
BnaCnng15000DBnaCnng15000D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IDU8]
Coordinates
chrLK032712:-:116471..117296
Molecular Weight (calculated)
25104.3 Da
IEP (calculated)
10.735
GRAVY (calculated)
-1.244
Length
212 amino acids
Sequence
(BLAST)
(BLAST)
001: MGGSTSKQKR NTARRSIKGR SNEERRRRTR RELDEKERVI SALKMAETEW RTERKNLREE GKKLRQKMQE KEEAKAKQRE WEWVVEQMCL ERAVREEAVE
101: RWKQLYFAIK TELDDLIHTT YGETLRQKPH EGEVKNTVQE LKKEVKVREE TIETLKGRIA LMEKQRHGKE REIDLLRQSL RILGSSSGKN KAPSSAPKNL
201: PTFKTKFIAA CK
101: RWKQLYFAIK TELDDLIHTT YGETLRQKPH EGEVKNTVQE LKKEVKVREE TIETLKGRIA LMEKQRHGKE REIDLLRQSL RILGSSSGKN KAPSSAPKNL
201: PTFKTKFIAA CK
001: MGGSTSKDER NSSKRRIKVK ANEQRRRETR RELDEKERVI LALKMAETEW RKERKRLREE VKRLRQKMEE KEEGKAKQHE WEWVVEQMCL ERAVREEAVE
101: RWKQLYFAIK NELDDLIHTT YGEALRQKPQ EEVAKAVQEL RKEVKARGET IETLKGRINL MEKQQNGKER EIDLLRQSLR ILGGSSGKNK ALSSTTRNLT
201: VFKTKFIGCK
101: RWKQLYFAIK NELDDLIHTT YGEALRQKPQ EEVAKAVQEL RKEVKARGET IETLKGRINL MEKQQNGKER EIDLLRQSLR ILGGSSGKNK ALSSTTRNLT
201: VFKTKFIGCK
Arabidopsis Description
Golgin family A protein [Source:UniProtKB/TrEMBL;Acc:Q9T0H4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.