CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG90296
KRG98291
KRH00424
KRH15737
KRH30312
KRH33541
KRH40763

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G13540.1	KRH00424	AT2G38490.1	21798944
AT4G13540.1	KRH40763	AT2G38490.1	21798944
AT4G13540.1	KRG90296	AT4G13540.1	21798944
AT4G13540.1	KRH15737	AT4G13540.1	21798944
AT4G13540.1	KRH33541	AT4G13540.1	21798944
AT4G13540.1	KRG98291	AT5G58720.1	21798944
AT4G13540.1	KRH30312	AT5G58720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH33541	Soybean	nucleus	96.05	96.9
KRH15737	Soybean	nucleus	46.93	93.04
VIT_05s0077g00530.t01	Wine grape	nucleus	48.25	54.73
PGSC0003DMT400030287	Potato	nucleus	32.89	45.45
Solyc09g091060.2.1	Tomato	cytosol	44.3	45.09
GSMUA_Achr1P11070_001	Banana	nucleus	33.33	42.94
Solyc12g097060.1.1	Tomato	cytosol	41.67	42.41
AT4G13540.1	Thale cress	nucleus	39.04	42.38
PGSC0003DMT400022249	Potato	cytosol	40.79	41.52
Bra032712.1-P	Field mustard	cytosol	34.21	40.84
CDY01136	Canola	nucleus	37.28	40.28
Bra015024.1-P	Field mustard	nucleus	39.91	40.27
CDY45564	Canola	nucleus	39.91	40.27
CDY47363	Canola	nucleus	37.28	40.09
CDX77442	Canola	nucleus	39.04	39.04
AT3G23930.1	Thale cress	nucleus	38.16	38.84

Protein Annotations

EMBL:ACUP02012594	EnsemblPlants:KRG90296	EnsemblPlantsGene:GLYMA_20G081000	EntrezGene:100815580	ncoils:Coil	PANTHER:PTHR37226
ProteinID:KRG90296	ProteinID:KRG90296.1	UniParc:UPI000233D9F3	UniProt:I1NEK7	MapMan:35.2	:

Description

hypothetical protein

Coordinates

chr20:+:30444961..30446341

Molecular Weight (calculated)

27549.5 Da

IEP (calculated)

9.489

GRAVY (calculated)

-1.130

Length

228 amino acids

Sequence
(BLAST)

001: MGGSVSKSGM RRKSSEKYVM NLKEKVRLLQ EEIKEMMYER EKETRSYERD IMVFTFKEAD WKQEGKRLRE EVKQLRSLVE EKDEKIREIE VGMMEKSSEK
101: EWELMGTKLL VEQMKEERAR RDEAVEKWKQ LYLAIKIELD ELIQRTYDGD GLYWKAEEND IQMENLKKEL QEKDETIKAL KTQLLSMEKE KYKKEREFDL
201: LRQSLRIMNG KKNSIQTKEK LLKSKLGK

Best Arabidopsis Sequence Match ( AT4G13540.1 )
(BLAST)

001: MGGSTSKDER NSSKRRIKVK ANEQRRRETR RELDEKERVI LALKMAETEW RKERKRLREE VKRLRQKMEE KEEGKAKQHE WEWVVEQMCL ERAVREEAVE
101: RWKQLYFAIK NELDDLIHTT YGEALRQKPQ EEVAKAVQEL RKEVKARGET IETLKGRINL MEKQQNGKER EIDLLRQSLR ILGGSSGKNK ALSSTTRNLT
201: VFKTKFIGCK

Arabidopsis Description

Golgin family A protein [Source:UniProtKB/TrEMBL;Acc:Q9T0H4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.