Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400010646 | |
| PGSC0003DMT400022249 | |
| PGSC0003DMT400030287 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G13540.1 | PGSC0003DMT400022249 | AT4G13540.1 | 21798944 |
| AT4G13540.1 | PGSC0003DMT400030287 | AT4G13540.1 | 21798944 |
| AT4G13540.1 | PGSC0003DMT400010646 | AT5G58720.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc09g091060.2.1 | Tomato | cytosol | 87.88 | 64.73 |
| PGSC0003DMT400022249 | Potato | cytosol | 59.39 | 43.75 |
| GSMUA_Achr1P11070_001 | Banana | nucleus | 40.61 | 37.85 |
| KRG90296 | Soybean | nucleus | 45.45 | 32.89 |
| KRH33541 | Soybean | nucleus | 44.85 | 32.74 |
| VIT_05s0077g00530.t01 | Wine grape | nucleus | 39.39 | 32.34 |
| Bra032712.1-P | Field mustard | cytosol | 34.55 | 29.84 |
| AT4G13540.1 | Thale cress | nucleus | 37.58 | 29.52 |
| CDY01136 | Canola | nucleus | 36.97 | 28.91 |
| CDY47363 | Canola | nucleus | 35.15 | 27.36 |
| KRH15737 | Soybean | nucleus | 18.79 | 26.96 |
| Bra015024.1-P | Field mustard | nucleus | 34.55 | 25.22 |
| CDY45564 | Canola | nucleus | 34.55 | 25.22 |
| AT3G23930.1 | Thale cress | nucleus | 33.94 | 25.0 |
| CDX77442 | Canola | nucleus | 34.55 | 25.0 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400030287 | EnsemblPlantsGene:PGSC0003DMG400011585 | EntrezGene:102586432 | ncoils:Coil | PANTHER:PTHR37226 | PGSC:PGSC0003DMG400011585 |
| RefSeq:XP_006340900.1 | SEG:seg | UniParc:UPI0002952114 | UniProt:M1AU04 | MapMan:35.2 | : |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400011585]
Coordinates
chr9:-:57491426..57492497
Molecular Weight (calculated)
19598.6 Da
IEP (calculated)
7.440
GRAVY (calculated)
-1.012
Length
165 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSFQTKDKS QPKDKVVEVL KYNVRFLQGE VNEIMCMREH ESQVNAQEMI IFALKEGEWK KEKKKLKEEV KKLKKKLEEK EEEEEKCKGI ENLSVKEDKE
101: WHQLATSYLL EQIRNEEARR DEAIEKWKQL YFAIKIELDE LIHRTNQGRG LCWKTGTNGI IRGDA
101: WHQLATSYLL EQIRNEEARR DEAIEKWKQL YFAIKIELDE LIHRTNQGRG LCWKTGTNGI IRGDA
001: MGGSTSKDER NSSKRRIKVK ANEQRRRETR RELDEKERVI LALKMAETEW RKERKRLREE VKRLRQKMEE KEEGKAKQHE WEWVVEQMCL ERAVREEAVE
101: RWKQLYFAIK NELDDLIHTT YGEALRQKPQ EEVAKAVQEL RKEVKARGET IETLKGRINL MEKQQNGKER EIDLLRQSLR ILGGSSGKNK ALSSTTRNLT
201: VFKTKFIGCK
101: RWKQLYFAIK NELDDLIHTT YGEALRQKPQ EEVAKAVQEL RKEVKARGET IETLKGRINL MEKQQNGKER EIDLLRQSLR ILGGSSGKNK ALSSTTRNLT
201: VFKTKFIGCK
Arabidopsis Description
Golgin family A protein [Source:UniProtKB/TrEMBL;Acc:Q9T0H4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.