Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY01136 | Canola | nucleus | 81.9 | 81.52 |
| CDY47363 | Canola | nucleus | 80.48 | 79.72 |
| Bra032712.1-P | Field mustard | cytosol | 71.43 | 78.53 |
| AT3G23930.1 | Thale cress | nucleus | 54.76 | 51.34 |
| KRH15737 | Soybean | nucleus | 23.33 | 42.61 |
| VIT_05s0077g00530.t01 | Wine grape | nucleus | 38.57 | 40.3 |
| KRG90296 | Soybean | nucleus | 42.38 | 39.04 |
| KRH33541 | Soybean | nucleus | 41.9 | 38.94 |
| PGSC0003DMT400030287 | Potato | nucleus | 29.52 | 37.58 |
| Solyc09g091060.2.1 | Tomato | cytosol | 39.05 | 36.61 |
| Solyc12g097060.1.1 | Tomato | cytosol | 36.19 | 33.93 |
| PGSC0003DMT400022249 | Potato | cytosol | 35.71 | 33.48 |
| GSMUA_Achr1P11070_001 | Banana | nucleus | 27.14 | 32.2 |
Protein Annotations
| ArrayExpress:AT4G13540 | EMBL:AY133693 | EnsemblPlants:AT4G13540.1 | EnsemblPlantsGene:AT4G13540 | EntrezGene:826986 | ncoils:Coil |
| PANTHER:PTHR37226 | ProteinID:AEE83291.1 | ProteinID:CAB41112.1 | ProteinID:CAB78396.1 | ProteinID:OAO96541.1 | RefSeq:AT4G13540 |
| RefSeq:AT4G13540-TAIR-G | RefSeq:NP_193090.1 | SEG:seg | TAIR:AT4G13540 | TAIR:AT4G13540.1 | UniParc:UPI000009E835 |
| UniProt:A0A178UUU7 | UniProt:Q9T0H4 | MapMan:35.2 | : | : | : |
Description
Golgin family A protein [Source:UniProtKB/TrEMBL;Acc:Q9T0H4]
Coordinates
chr4:+:7869320..7870790
Molecular Weight (calculated)
24967.1 Da
IEP (calculated)
10.584
GRAVY (calculated)
-1.183
Length
210 amino acids
Sequence
(BLAST)
(BLAST)
001: MGGSTSKDER NSSKRRIKVK ANEQRRRETR RELDEKERVI LALKMAETEW RKERKRLREE VKRLRQKMEE KEEGKAKQHE WEWVVEQMCL ERAVREEAVE
101: RWKQLYFAIK NELDDLIHTT YGEALRQKPQ EEVAKAVQEL RKEVKARGET IETLKGRINL MEKQQNGKER EIDLLRQSLR ILGGSSGKNK ALSSTTRNLT
201: VFKTKFIGCK
101: RWKQLYFAIK NELDDLIHTT YGEALRQKPQ EEVAKAVQEL RKEVKARGET IETLKGRINL MEKQQNGKER EIDLLRQSLR ILGGSSGKNK ALSSTTRNLT
201: VFKTKFIGCK
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.