Factsheet for Bra032712.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000066.1-P
Bra005103.1-P
Bra006747.1-P
Bra020357.1-P
Bra032712.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G13540.1	Bra000066.1-P	AT2G38490.1	21798944
AT4G13540.1	Bra005103.1-P	AT2G38490.1	21798944
AT4G13540.1	Bra032712.1-P	AT4G13540.1	21798944
AT4G13540.1	Bra006747.1-P	AT5G58720.1	21798944
AT4G13540.1	Bra020357.1-P	AT5G58720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY01136	Canola	nucleus	92.67	83.89
CDY47363	Canola	nucleus	89.53	80.66
AT4G13540.1	Thale cress	nucleus	78.53	71.43
Bra015024.1-P	Field mustard	nucleus	56.02	47.35
KRH15737	Soybean	nucleus	27.23	45.22
VIT_05s0077g00530.t01	Wine grape	nucleus	39.27	37.31
Solyc09g091060.2.1	Tomato	cytosol	41.88	35.71
KRH33541	Soybean	nucleus	41.88	35.4
PGSC0003DMT400030287	Potato	nucleus	29.84	34.55
KRG90296	Soybean	nucleus	40.84	34.21
PGSC0003DMT400022249	Potato	cytosol	36.65	31.25
Solyc12g097060.1.1	Tomato	cytosol	36.65	31.25
GSMUA_Achr1P11070_001	Banana	nucleus	27.75	29.94

Protein Annotations

EnsemblPlants:Bra032712.1	EnsemblPlants:Bra032712.1-P	EnsemblPlantsGene:Bra032712	ncoils:Coil	PANTHER:PTHR37226	SEG:seg
UniParc:UPI0002543E03	UniProt:M4EV79	MapMan:35.2	:	:	:

Description

AT4G13540 (E=9e-060) | unknown protein

Coordinates

chrA04:-:5273880..5274533

Molecular Weight (calculated)

22592.3 Da

IEP (calculated)

10.275

GRAVY (calculated)

-1.051

Length

191 amino acids

Sequence
(BLAST)

001: MKRGGDQQEE SWMRERVISA LKMAETEWRK ERKNLREEVK KLRQKMQEKE EAKAKQNEWE WVVEQMCLER AVREEAVERW KQLYFAIKTE LDDLIHTTYV
101: VGETLRQKPH EGGAKNTVQE LRKEVKVREE TIETLKGRIA LMEKQRHGKE REIDLLRQSL RILGSSSGKN KAPSSAPKNL PTFKTKFIAC K

Best Arabidopsis Sequence Match ( AT4G13540.1 )
(BLAST)

001: MGGSTSKDER NSSKRRIKVK ANEQRRRETR RELDEKERVI LALKMAETEW RKERKRLREE VKRLRQKMEE KEEGKAKQHE WEWVVEQMCL ERAVREEAVE
101: RWKQLYFAIK NELDDLIHTT YGEALRQKPQ EEVAKAVQEL RKEVKARGET IETLKGRINL MEKQQNGKER EIDLLRQSLR ILGGSSGKNK ALSSTTRNLT
201: VFKTKFIGCK

Arabidopsis Description

Golgin family A protein [Source:UniProtKB/TrEMBL;Acc:Q9T0H4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.