Factsheet for Bra006747.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000304.1-P
Bra001302.1-P
Bra002437.1-P
Bra002438.1-P
Bra002606.1-P
Bra006738.1-P
Bra012753.1-P
Bra018304.1-P
Bra020223.1-P
Bra020224.1-P
Bra020343.1-P
Bra021651.1-P
Bra022807.1-P
Bra029780.1-P
Bra034075.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G58720.1	Bra018304.1-P	AT2G30580.1	21798944
AT5G58720.1	Bra021651.1-P	AT2G30580.1	21798944
AT5G58720.1	Bra022807.1-P	AT2G30580.1	21798944
AT5G58720.1	Bra000304.1-P	AT2G43370.1	21798944
AT5G58720.1	Bra001302.1-P	AT3G09630.1	21798944
AT5G58720.1	Bra029780.1-P	AT3G09630.1	21798944
AT5G58720.1	Bra034075.1-P	AT3G09630.1	21798944
AT5G58720.1	Bra012753.1-P	AT4G15900.1	10220464
AT5G58720.1	Bra002437.1-P	AT5G22890.1	21798944
AT5G58720.1	Bra002438.1-P	AT5G22890.1	21798944
AT5G58720.1	Bra020223.1-P	AT5G22890.1	21798944
AT5G58720.1	Bra020224.1-P	AT5G22890.1	21798944
AT5G58720.1	Bra002606.1-P	AT5G58950.1	21798944
AT5G58720.1	Bra006738.1-P	AT5G58950.1	21798944
AT5G58720.1	Bra020343.1-P	AT5G58950.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY61025	Canola	nucleus	100.0	100.0
Bra020357.1-P	Field mustard	nucleus	69.42	65.97
AT5G58720.1	Thale cress	nucleus	68.21	65.32
GSMUA_Achr7P14310_001	Banana	endoplasmic reticulum, golgi	10.26	54.84
VIT_06s0004g06590.t01	Wine grape	nucleus	44.67	45.4
Zm00001d017254_P002	Maize	cytosol	14.08	45.16
KRG98291	Soybean	nucleus	43.06	42.04
KRH30312	Soybean	nucleus	42.86	41.6
PGSC0003DMT400010646	Potato	nucleus	42.05	41.14
Solyc06g007110.2.1	Tomato	nucleus	42.05	41.06
GSMUA_Achr7P14320_001	Banana	nucleus	29.38	33.8
TraesCS3B01G177300.1	Wheat	plastid	34.61	31.91
TraesCS3A01G150300.2	Wheat	plastid	36.82	31.02
OQU86087	Sorghum	nucleus	36.82	30.81
TraesCS3D01G158200.1	Wheat	plastid	36.22	30.51
HORVU3Hr1G030600.8	Barley	mitochondrion	36.82	26.6
Zm00001d039321_P008	Maize	nucleus	34.61	26.3
Os01t0225100-01	Rice	nucleus	12.68	22.34
Bra021108.1-P	Field mustard	nucleus	19.52	20.38
Bra027247.1-P	Field mustard	nucleus	19.52	20.08

Protein Annotations

Gene3D:3.30.1370.110	MapMan:35.1	EnsemblPlantsGene:Bra006747	EnsemblPlants:Bra006747.1	EnsemblPlants:Bra006747.1-P	InterPro:DUF1771
InterPro:IPR002625	UniProt:M4CRA6	PFAM:PF01713	PFAM:PF08590	PFscan:PS50828	PANTHER:PTHR13308
PANTHER:PTHR13308:SF22	SMART:SM00463	SMART:SM01162	SUPFAM:SSF160443	InterPro:Smr_dom	InterPro:Smr_dom_sf
UniParc:UPI000254030B	SEG:seg	:	:	:	:

Description

AT5G58720 (E=5e-183) | PRLI-interacting factor, putative

Coordinates

chrA03:+:4885003..4887677

Molecular Weight (calculated)

54237.3 Da

IEP (calculated)

6.162

GRAVY (calculated)

-0.641

Length

497 amino acids

Sequence
(BLAST)

001: MKHDSQQKRR KKKRPSSGDG AATSGVNTKE LDEEKRHIES LMDAFCSVSM EEATSAYREA AGDLNKAAEL LSDLVENGDD PSTSSGQETG STSEYGAGSS
101: SSCCGDDVAR ESLFMGGRSK QIRVIAATGM VSSVIAKDYL KAKKEFPSFV ERSKELSGKK AGDREKAEQF LTSMLGDDCE LSMAVVRDVL CQCGYDVDMA
201: LNVLLDMSSS SSTNDDSLSG RSSRIGFSDS LADTSFDTDT SESEPSFWGG FSPRDYSKAL MSDPFTTRQG SCEPFHPQKM LESLFNIPQS TKHEPKTMSW
301: RNVAKKMQSL GIDASSSSGE GSHPENFGKD DGYHELRKGA NDQWNVTKSY YQKAAEAYSK GGRAHAAYLS DKGRAASKLA QRADERASQD IFVARNKGIE
401: NMITIDLHGQ HVKQAMRLLK MHLLLGAYVP SIQTLRVITG CGSHGFGKSK VKQSVTKLLE REGVGYCEEN RGTLLIKLEG CSREFSFIDT ESDSDLS

Best Arabidopsis Sequence Match ( AT5G58720.1 )
(BLAST)

001: MKQKNQHKKK KKRSCAAKPS GDGTTSDGNK KDVEEERKDG EGKREIENVG KNFIESLMEA FCSVSMEEAM AAYKEAGGDL NKAAEILSDL VESGDDPSTS
101: SVASGSSGQE TASTSEYGAG SSSSCSEDLT RDRWFKGSKQ SRVIAATGMV SSVIAKDYLK PNPVRKEFPM MERSKELCGN GKKAADREKA EQFLSSMLGD
201: DCELSMAVVR DVLCQCGYDV DMALNVLLDM SSSSTDDSLS GKCFGIGVSD SLAESSFDTD TSDCELFWGG DYSQRDYAKA LMSSQDPFAT TQGIDELGLP
301: QKVLESLFNI RQNPKHESKT TSWRNVAKKM QSLGIDASSS SGEEPHPNTF VKDDSYHELR KGANDQWNVT KSYYQKAAEA YSKGGRAHAA YLSDKGRVAS
401: KQAQRADERA SQDIFVARNK GIENVVTIDL HGQHVKPAMK LLKLHLLFGS YVPSIQTLRV ITGCGASGFG KSKVKQSVVK LLEREGVRYC EENRGTLLIK
501: LDGGSREFSF LDTESDSDE

Arabidopsis Description

PIPCSMR domain-containing protein At5g58720 [Source:UniProtKB/Swiss-Prot;Acc:O65573]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.