Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH30312 | Soybean | nucleus | 85.46 | 84.96 |
| GSMUA_Achr7P14310_001 | Banana | endoplasmic reticulum, golgi | 10.22 | 55.91 |
| VIT_06s0004g06590.t01 | Wine grape | nucleus | 47.74 | 49.69 |
| Zm00001d017254_P002 | Maize | cytosol | 14.93 | 49.03 |
| PGSC0003DMT400010646 | Potato | nucleus | 46.76 | 46.85 |
| CDX71154 | Canola | nucleus | 40.47 | 46.82 |
| Solyc06g007110.2.1 | Tomato | nucleus | 46.37 | 46.37 |
| CDY32688 | Canola | nucleus | 44.79 | 44.79 |
| AT5G58720.1 | Thale cress | nucleus | 45.19 | 44.32 |
| CDY02832 | Canola | nucleus | 44.4 | 43.3 |
| Bra006747.1-P | Field mustard | nucleus | 42.04 | 43.06 |
| CDY61025 | Canola | nucleus | 42.04 | 43.06 |
| Bra020357.1-P | Field mustard | nucleus | 44.01 | 42.83 |
| GSMUA_Achr7P14320_001 | Banana | nucleus | 27.5 | 32.41 |
| OQU86087 | Sorghum | nucleus | 37.52 | 32.15 |
| TraesCS3B01G177300.1 | Wheat | plastid | 33.79 | 31.91 |
| TraesCS3A01G150300.2 | Wheat | plastid | 35.56 | 30.68 |
| TraesCS3D01G158200.1 | Wheat | plastid | 35.36 | 30.51 |
| HORVU3Hr1G030600.8 | Barley | mitochondrion | 35.95 | 26.6 |
| Zm00001d039321_P008 | Maize | nucleus | 33.2 | 25.84 |
| KRH21455 | Soybean | vacuole | 22.2 | 21.52 |
| Os01t0225100-01 | Rice | nucleus | 11.59 | 20.92 |
Protein Annotations
| EMBL:ACUP02010865 | EnsemblPlants:KRG98291 | EnsemblPlantsGene:GLYMA_18G063000 | EntrezGene:100795279 | Gene3D:3.30.1370.110 | InterPro:DUF1771 |
| InterPro:IPR002625 | InterPro:Smr_dom | InterPro:Smr_dom_sf | PANTHER:PTHR13308 | PANTHER:PTHR13308:SF22 | PFAM:PF01713 |
| PFAM:PF08590 | PFscan:PS50828 | ProteinID:KRG98291 | ProteinID:KRG98291.1 | SEG:seg | SMART:SM00463 |
| SMART:SM01162 | SUPFAM:SSF160443 | UniParc:UPI0001BA5C28 | UniProt:I1MZZ7 | MapMan:35.1 | : |
Description
hypothetical protein
Coordinates
chr18:-:5762616..5768784
Molecular Weight (calculated)
56451.8 Da
IEP (calculated)
7.032
GRAVY (calculated)
-0.706
Length
509 amino acids
Sequence
(BLAST)
(BLAST)
001: MKNPRKKKRP KPAQKKVLEE NNKGVVVAGN ENEEEEKRKR SVLEALVEAF SLSSIREASM AYEIAGGDPD RASEILRKGS SDRFEDSFSC FSYGSSSSGG
101: SSGGGGSSSC SGLELGSKGG RQQKKKVVAS TGTVSTVLGK EYVRRNNIRN KGFSSNGVFE MEEAEQFLCS MLGDDSDINL AVVRDVLCQC GYDIETASDV
201: LLDLAASTND KPNTDRHPNY RVDNIDDERF FADPNDSLID RRSECTSLSS EGYLSDNPWP FGRKYVEVLN SSKADSAISP GCTKSEIPQK VLESLFNIPK
301: STEHDKDTMN WRNVVKKIQS LGPGFNVSPH VAESQQHTCA KGDEYHVFRE DSKQQWDSVK SYYTKAATAY TKRERAYAAY LSDQGKEQTR LAQKADTKAS
401: HDIFIARNKG IENMITIDLH GQHVKQAMRM LKLHLLFGSY VPSVQTLRVI TGCGSHGVGK SKLKQSVINL LDREAIEWRE ENQGTVLIKL SGWREYSFLD
501: TSSDSDSND
101: SSGGGGSSSC SGLELGSKGG RQQKKKVVAS TGTVSTVLGK EYVRRNNIRN KGFSSNGVFE MEEAEQFLCS MLGDDSDINL AVVRDVLCQC GYDIETASDV
201: LLDLAASTND KPNTDRHPNY RVDNIDDERF FADPNDSLID RRSECTSLSS EGYLSDNPWP FGRKYVEVLN SSKADSAISP GCTKSEIPQK VLESLFNIPK
301: STEHDKDTMN WRNVVKKIQS LGPGFNVSPH VAESQQHTCA KGDEYHVFRE DSKQQWDSVK SYYTKAATAY TKRERAYAAY LSDQGKEQTR LAQKADTKAS
401: HDIFIARNKG IENMITIDLH GQHVKQAMRM LKLHLLFGSY VPSVQTLRVI TGCGSHGVGK SKLKQSVINL LDREAIEWRE ENQGTVLIKL SGWREYSFLD
501: TSSDSDSND
001: MKQKNQHKKK KKRSCAAKPS GDGTTSDGNK KDVEEERKDG EGKREIENVG KNFIESLMEA FCSVSMEEAM AAYKEAGGDL NKAAEILSDL VESGDDPSTS
101: SVASGSSGQE TASTSEYGAG SSSSCSEDLT RDRWFKGSKQ SRVIAATGMV SSVIAKDYLK PNPVRKEFPM MERSKELCGN GKKAADREKA EQFLSSMLGD
201: DCELSMAVVR DVLCQCGYDV DMALNVLLDM SSSSTDDSLS GKCFGIGVSD SLAESSFDTD TSDCELFWGG DYSQRDYAKA LMSSQDPFAT TQGIDELGLP
301: QKVLESLFNI RQNPKHESKT TSWRNVAKKM QSLGIDASSS SGEEPHPNTF VKDDSYHELR KGANDQWNVT KSYYQKAAEA YSKGGRAHAA YLSDKGRVAS
401: KQAQRADERA SQDIFVARNK GIENVVTIDL HGQHVKPAMK LLKLHLLFGS YVPSIQTLRV ITGCGASGFG KSKVKQSVVK LLEREGVRYC EENRGTLLIK
501: LDGGSREFSF LDTESDSDE
101: SVASGSSGQE TASTSEYGAG SSSSCSEDLT RDRWFKGSKQ SRVIAATGMV SSVIAKDYLK PNPVRKEFPM MERSKELCGN GKKAADREKA EQFLSSMLGD
201: DCELSMAVVR DVLCQCGYDV DMALNVLLDM SSSSTDDSLS GKCFGIGVSD SLAESSFDTD TSDCELFWGG DYSQRDYAKA LMSSQDPFAT TQGIDELGLP
301: QKVLESLFNI RQNPKHESKT TSWRNVAKKM QSLGIDASSS SGEEPHPNTF VKDDSYHELR KGANDQWNVT KSYYQKAAEA YSKGGRAHAA YLSDKGRVAS
401: KQAQRADERA SQDIFVARNK GIENVVTIDL HGQHVKPAMK LLKLHLLFGS YVPSIQTLRV ITGCGASGFG KSKVKQSVVK LLEREGVRYC EENRGTLLIK
501: LDGGSREFSF LDTESDSDE
Arabidopsis Description
PIPCSMR domain-containing protein At5g58720 [Source:UniProtKB/Swiss-Prot;Acc:O65573]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.