CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, endoplasmic reticulum

Predictor Summary:

plastid 2
cytosol 2
extracellular 5
golgi 4
plasma membrane 4
endoplasmic reticulum 5
vacuole 4
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	mitochondrion, nucleus, plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG92440
KRG98291
KRH10001
KRH16959
KRH23330
KRH25284
KRH30312
KRH30384
KRH34357
KRH39137
KRH41763
KRH44167
KRH47141
KRH48568
KRH53667
KRH60461
KRH64261

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G09630.1	KRH39137	AT1G17970.1	21798944
AT3G09630.1	KRH41763	AT1G17970.1	21798944
AT3G09630.1	KRH48568	AT1G17970.1	21798944
AT3G09630.1	KRH60461	AT1G17970.1	21798944
AT3G09630.1	KRH10001	AT3G13720.1	21798944
AT3G09630.1	KRH23330	AT3G13720.1	21798944
AT3G09630.1	KRH44167	AT3G13720.1	21798944
AT3G09630.1	KRH47141	AT3G13720.1	21798944
AT3G09630.1	KRG92440	AT3G22960.1	21798944
AT3G09630.1	KRH34357	AT3G22960.1	21798944
AT5G02870.1	KRH16959	AT3G49580.1	21798944
AT5G02870.1	KRH53667	AT3G49580.1	21798944
AT5G02870.1	KRH64261	AT3G49580.1	21798944
AT5G02870.1	KRH25284	AT5G22310.1	21798944
AT5G02870.1	KRH30384	AT5G22310.1	21798944
AT5G02870.1	KRG98291	AT5G58720.1	21798944
AT5G02870.1	KRH30312	AT5G58720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH19796	Soybean	nucleus	70.0	15.56
KRH32387	Soybean	nucleus	68.89	15.31
PGSC0003DMT400028707	Potato	cytosol	62.22	14.32
Solyc09g007250.2.1	Tomato	nucleus	63.33	14.04
PGSC0003DMT400045381	Potato	cytosol	63.33	14.0
PGSC0003DMT400071725	Potato	cytosol	62.22	13.79
KRH67633	Soybean	endoplasmic reticulum, mitochondrion	58.89	13.35
VIT_08s0040g03200.t01	Wine grape	cytosol	60.0	13.3
Solyc10g086010.1.1	Tomato	extracellular	63.33	13.1
VIT_06s0004g00360.t01	Wine grape	cytosol	58.89	13.09
CDY11231	Canola	cytosol	56.67	13.01
Bra034075.1-P	Field mustard	cytosol	55.56	12.85
CDY41301	Canola	cytosol	55.56	12.79
CDY22192	Canola	cytosol	55.56	12.79
AT3G09630.1	Thale cress	cytosol	56.67	12.56
CDY44721	Canola	cytosol, extracellular	56.67	12.56
Bra005749.1-P	Field mustard	cytosol	56.67	12.56
Bra009560.1-P	Field mustard	cytosol	56.67	12.56
Bra029780.1-P	Field mustard	cytosol	56.67	12.56
CDX80842	Canola	cytosol	56.67	12.56
CDX70339	Canola	cytosol	56.67	12.56
AT5G02870.1	Thale cress	cytosol	56.67	12.53
CDY10418	Canola	cytosol	56.67	12.53
KRG95915	Soybean	endoplasmic reticulum	58.89	12.33
CDX73989	Canola	cytosol	55.56	12.32
Bra001302.1-P	Field mustard	cytosol	55.56	12.32
CDY41596	Canola	cytosol	55.56	12.32
CDY07934	Canola	cytosol, endoplasmic reticulum, mitochondrion, plasma membrane, plastid	53.33	6.16
Solyc10g084350.1.1	Tomato	nucleus	7.78	3.4
KRG89783	Soybean	plastid	1.11	1.04
Bra006658.1-P	Field mustard	plastid	1.11	1.01

Protein Annotations

Gene3D:3.40.1370.10	MapMan:35.1	EMBL:ACUP02012142	EnsemblPlantsGene:GLYMA_19G184000	GO:GO:0002181	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0022625
InterPro:IPR023574	UniProt:K7MZ28	EnsemblPlants:KRG96019	ProteinID:KRG96019	ProteinID:KRG96019.1	PANTHER:PTHR19431
InterPro:Ribosomal_L4_dom_sf	SUPFAM:SSF52166	UniParc:UPI000295F2D8	:	:	:

Description

hypothetical protein

Coordinates

chr19:-:44245668..44246026

Molecular Weight (calculated)

10196.6 Da

IEP (calculated)

9.546

GRAVY (calculated)

-0.040

Length

90 amino acids

Sequence
(BLAST)

1: MLAKEPLKTL VSFTVASVIP SLVLAYDQRI EFVLELPLVV SDSAEGVEKT KEAIKVLKQI RAFPDVEKAK DSHNICLYKG KMHNRRYISH

Best Arabidopsis Sequence Match ( AT3G09630.2 )
(BLAST)

001: MAAAAARPLV TIQTLDGDMS TDQSSTVVLP DVMTAPVRPD IVNFVHAQIS NNSRQPYAVS KKAGHQTSAE SWGTGRAVSR IPRVPGGGTH RAGQAAFGNM
101: CRGGRMFAPT KIWRRWHRRV NVNMKRHAIV SAIAATAVPA LVMARGHKIE NVPEMPLVVS DSAEAVEKTS AAIKVLKQIG AYDDAEKAKN SIGIRPGKGK
201: MRNRRYISRK GPLVVYGTEG SKIVKAFRNL PGVELCHVER LNLLKLAPGG HLGRFVIWTK SAFEKLESIY GSFEKPSEKK KGYVLPRAKM VNADLARIIN
301: SDEIQSVVNP IKKDAKRAVL KKNPLKNLNV MLKLNPYAKT AKRMSLLAEA QRVKAKKEKL AKKRKTVTKE ALAIKAAGKS WYKTMISDSD YTEFDNFTKW
401: LGASQ

Arabidopsis Description

RPL4A60S ribosomal protein L4-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SF40]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.