CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70996
CDX71154
CDX88802
CDX92367
CDY02832
CDY08148
CDY32688
CDY61025
CDY67997

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G02870.1	CDY08148	AT3G49580.1	21798944
AT5G02870.1	CDX70996	AT5G22310.1	21798944
AT5G02870.1	CDX88802	AT5G22310.1	21798944
AT5G02870.1	CDX92367	AT5G22310.1	21798944
AT5G02870.1	CDY67997	AT5G22310.1	21798944
AT5G02870.1	CDX71154	AT5G58720.1	21798944
AT5G02870.1	CDY02832	AT5G58720.1	21798944
AT5G02870.1	CDY32688	AT5G58720.1	21798944
AT5G02870.1	CDY61025	AT5G58720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra009560.1-P	Field mustard	cytosol	99.75	99.75
CDY10418	Canola	cytosol	98.77	98.53
CDY11231	Canola	cytosol	94.58	97.96
CDX80842	Canola	cytosol	97.54	97.54
CDY22192	Canola	cytosol	92.86	96.42
CDY41301	Canola	cytosol	92.86	96.42
CDY41596	Canola	cytosol	94.33	94.33
CDY44721	Canola	cytosol, extracellular	94.33	94.33
AT5G02870.1	Thale cress	cytosol	94.33	94.1
CDX73989	Canola	cytosol	91.63	91.63
KRH19796	Soybean	nucleus	83.25	83.46
KRH32387	Soybean	nucleus	82.02	82.22
Solyc10g084350.1.1	Tomato	nucleus	41.13	81.07
PGSC0003DMT400028707	Potato	cytosol	77.09	80.05
PGSC0003DMT400045381	Potato	cytosol	79.31	79.12
GSMUA_Achr4P21120_001	Banana	cytosol	78.82	78.82
GSMUA_Achr5P03060_001	Banana	cytosol	78.33	78.33
Solyc09g007250.2.1	Tomato	nucleus	78.33	78.33
PGSC0003DMT400071725	Potato	cytosol	78.33	78.33
GSMUA_Achr4P28500_001	Banana	cytosol	21.18	76.79
KRH67633	Soybean	endoplasmic reticulum, mitochondrion	73.15	74.81
KRG95915	Soybean	endoplasmic reticulum	78.82	74.42
Solyc10g086010.1.1	Tomato	extracellular	79.31	74.02
TraesCS1B01G274700.2	Wheat	cytosol, nucleus	73.4	73.76
TraesCS1D01G264200.1	Wheat	cytosol	73.15	73.51
TraesCS5B01G442100.1	Wheat	cytosol, golgi, nucleus, unclear	72.91	73.27
EER90739	Sorghum	cytosol, plastid	72.91	73.27
TraesCS5A01G439100.2	Wheat	cytosol, unclear	72.91	73.27
Zm00001d007824_P001	Maize	plasma membrane	72.66	73.02
TraesCS5D01G446300.2	Wheat	cytosol	72.66	73.02
GSMUA_Achr7P01370_001	Banana	cytosol	11.33	73.02
GSMUA_Achr4P28490_001	Banana	nucleus	11.33	73.02
HORVU5Hr1G105870.1	Barley	cytosol, plasma membrane	72.91	72.55
Zm00001d013076_P001	Maize	plasma membrane	72.17	72.52
Zm00001d034440_P001	Maize	mitochondrion, plasma membrane	71.92	72.28
TraesCS1A01G354400.1	Wheat	cytosol, extracellular, golgi, unclear	71.67	72.03
KXG34535	Sorghum	cytosol	71.43	71.78
Os07t0180900-01	Rice	nucleus, plasma membrane	71.43	71.6
Zm00001d018957_P001	Maize	plasma membrane	70.94	71.46
Os03t0796501-00	Rice	nucleus	69.46	69.8
TraesCS2A01G253600.1	Wheat	cytosol	68.97	69.48
HORVU4Hr1G075710.1	Barley	mitochondrion	72.17	69.1
KRG96019	Soybean	endoplasmic reticulum, extracellular	12.56	56.67
VIT_15s0045g00110.t01	Wine grape	cytosol	30.05	55.71
GSMUA_Achr2P12650_001	Banana	plastid	51.72	52.37
CDY07934	Canola	cytosol, endoplasmic reticulum, mitochondrion, plasma membrane, plastid	90.64	47.24
VIT_00s0208g00020.t01	Wine grape	cytosol	29.56	30.93

Protein Annotations

MapMan:17.1.2.1.2	Gene3D:3.40.1370.10	GO:A0A078C262	EnsemblPlants:CDX70339	ProteinID:CDX70339	ProteinID:CDX70339.1
ncoils:Coil	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00136498001	InterPro:IPR023574	PFAM:PF00573
PFAM:PF14374	ScanProsite:PS00939	PANTHER:PTHR19431	PANTHER:PTHR19431:SF1	InterPro:Ribos_L4_C_dom	InterPro:Ribosomal_L4/L1e
InterPro:Ribosomal_L4/L1e_euk/arc_CS	InterPro:Ribosomal_L4_dom_sf	SUPFAM:SSF52166	UniParc:UPI0004EDC5F0	SEG:seg	:

Description

BnaA10g26880D

Coordinates

chrLK031790:-:4180331..4181996

Molecular Weight (calculated)

44719.6 Da

IEP (calculated)

10.885

GRAVY (calculated)

-0.387

Length

406 amino acids

Sequence
(BLAST)

001: MAAAAARPLV SVQGLDGDMT TDQSTTVCLP DVMTAPVRPD IVNFVHAQIS NNSRQPYAVS KKAGHQTSAE SWGTGRAVSR IPRVPGGGTH RAGQAAFGNM
101: CRGGRMFAPT KIWRRWHRRV NVNMKRHAIV SAIAATAVPS LVMARGHKIE NVPEMPLVVS DSAEAVEKTS AAIKVLKQIG AYDDAEKAKD SIGIRSGVGK
201: MRNRRYICRK GPLVVYGTEG AKIVKAFRNI TGVELCHVER LNLLKLAPGG HLGRFVIWTK SAFEKLESIY GSFEKPSEKK KGYVLPRAKM VNADLARIIN
301: SDEVQSVVKP IKKDAKRAVM KKNPLKNLNV MLKLNPYAKT AKRMSLLAEA QRVKSKKEKL EKKRKPVTKE EAQAIKAAGK AWYQTMISDS DYTDFDNFTK
401: WLGASQ

Best Arabidopsis Sequence Match ( AT3G09630.1 )
(BLAST)

001: MAAAAARPLV TIQTLDGDMS TDQSSTVVLP DVMTAPVRPD IVNFVHAQIS NNSRQPYAVS KKAGHQTSAE SWGTGRAVSR IPRVPGGGTH RAGQAAFGNM
101: CRGGRMFAPT KIWRRWHRRV NVNMKRHAIV SAIAATAVPA LVMARGHKIE NVPEMPLVVS DSAEAVEKTS AAIKVLKQIG AYDDAEKAKN SIGIRPGKGK
201: MRNRRYISRK GPLVVYGTEG SKIVKAFRNL PGVELCHVER LNLLKLAPGG HLGRFVIWTK SAFEKLESIY GSFEKPSEKK KGYVLPRAKM VNADLARIIN
301: SDEIQSVVNP IKKDAKRAVL KKNPLKNLNV MLKLNPYAKT AKRMSLLAEA QRVKAKKEKL AKKRKTVTKE EALAIKAAGK SWYKTMISDS DYTEFDNFTK
401: WLGASQ

Arabidopsis Description

RPL4A60S ribosomal protein L4-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SF40]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.