Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os07t0180900-01 | Rice | nucleus, plasma membrane | 89.33 | 88.89 |
| Zm00001d007824_P001 | Maize | plasma membrane | 86.6 | 86.39 |
| KXG34535 | Sorghum | cytosol | 86.1 | 85.89 |
| Zm00001d018957_P001 | Maize | plasma membrane | 84.86 | 84.86 |
| TraesCS5A01G439100.2 | Wheat | cytosol, unclear | 83.13 | 82.92 |
| TraesCS1A01G354400.1 | Wheat | cytosol, extracellular, golgi, unclear | 81.89 | 81.68 |
| GSMUA_Achr5P03060_001 | Banana | cytosol | 72.7 | 72.17 |
| GSMUA_Achr4P21120_001 | Banana | cytosol | 72.46 | 71.92 |
| GSMUA_Achr4P28500_001 | Banana | cytosol | 19.6 | 70.54 |
| Bra009560.1-P | Field mustard | cytosol | 69.73 | 69.21 |
| CDY41596 | Canola | cytosol | 69.73 | 69.21 |
| CDY44721 | Canola | cytosol, extracellular | 69.73 | 69.21 |
| AT3G09630.1 | Thale cress | cytosol | 69.73 | 69.21 |
| CDX70339 | Canola | cytosol | 69.48 | 68.97 |
| CDX80842 | Canola | cytosol | 69.23 | 68.72 |
| CDY10418 | Canola | cytosol | 69.23 | 68.55 |
| Bra005749.1-P | Field mustard | cytosol | 68.98 | 68.47 |
| AT5G02870.1 | Thale cress | cytosol | 68.98 | 68.3 |
| GSMUA_Achr7P01370_001 | Banana | cytosol | 10.67 | 68.25 |
| Bra029780.1-P | Field mustard | cytosol | 68.73 | 68.23 |
| CDY41301 | Canola | cytosol | 66.0 | 68.03 |
| PGSC0003DMT400028707 | Potato | cytosol | 66.0 | 68.03 |
| CDY22192 | Canola | cytosol | 65.76 | 67.77 |
| CDX73989 | Canola | cytosol | 68.24 | 67.73 |
| CDY11231 | Canola | cytosol | 65.76 | 67.6 |
| Bra001302.1-P | Field mustard | cytosol | 67.99 | 67.49 |
| Solyc09g007250.2.1 | Tomato | nucleus | 67.49 | 67.0 |
| PGSC0003DMT400071725 | Potato | cytosol | 67.25 | 66.75 |
| PGSC0003DMT400045381 | Potato | cytosol | 66.5 | 65.85 |
| Solyc10g084350.1.1 | Tomato | nucleus | 33.25 | 65.05 |
| Bra034075.1-P | Field mustard | cytosol | 61.54 | 63.75 |
| GSMUA_Achr4P28490_001 | Banana | nucleus | 9.68 | 61.9 |
| Solyc10g086010.1.1 | Tomato | extracellular | 66.25 | 61.38 |
| GSMUA_Achr2P12650_001 | Banana | plastid | 46.65 | 46.88 |
| Bra006658.1-P | Field mustard | plastid | 9.18 | 37.37 |
| VIT_02s0087g00870.t01 | Wine grape | cytosol | 10.92 | 35.77 |
| CDY07934 | Canola | cytosol, endoplasmic reticulum, mitochondrion, plasma membrane, plastid | 66.75 | 34.53 |
| KRG89783 | Soybean | plastid | 3.97 | 16.67 |
Protein Annotations
| MapMan:17.1.2.1.2 | Gene3D:3.40.1370.10 | GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | InterPro:IPR023574 | PFAM:PF00573 |
| PFAM:PF14374 | ScanProsite:PS00939 | PANTHER:PTHR19431 | PANTHER:PTHR19431:SF1 | InterPro:Ribos_L4_C_dom | InterPro:Ribosomal_L4/L1e |
| InterPro:Ribosomal_L4/L1e_euk/arc_CS | InterPro:Ribosomal_L4_dom_sf | SUPFAM:SSF52166 | EnsemblPlantsGene:TraesCS2A01G253600 | EnsemblPlants:TraesCS2A01G253600.1 | SEG:seg |
Description
No Description!
Coordinates
chr2A:+:385906121..385914877
Molecular Weight (calculated)
44536.1 Da
IEP (calculated)
11.226
GRAVY (calculated)
-0.393
Length
403 amino acids
Sequence
(BLAST)
(BLAST)
001: MATNTRPIVS VKALEGDMTT DCAGLALAEV FRSPIRPDVV RSAHRLLSCN KRQPYAVSRR AGHQTSAESW GTGRAVSRIP RVPGGGTHRA GQGAFGNMCC
101: GGRMFAPTKT WRKWHRRVNV HMRRVAVTSA LAATAVPALV LARGHRIETV PEMPLVISDS AESIEKTSQA IKILKQTGAY ADAEKAQDSV GIRTGKGKMR
201: NRRYINRKGP LVVYGTEGSK IVKAFRNLPG VDVANVERLN LLDLAPGGHL GRFVIWTQIA FKKLEEVYGT FDAPSQRNGF FLPRPKMTNA DLGRIINSDE
301: VQSVVKPTNK EIKLRKKRRN PLKNVAAVLK LNPYFGTARR MATLVEAARM KARKEKIASK RTRLSPEEAA KVKAAGKAWY ETMISDSDYT EFDVFSKWLG
401: VSQ
101: GGRMFAPTKT WRKWHRRVNV HMRRVAVTSA LAATAVPALV LARGHRIETV PEMPLVISDS AESIEKTSQA IKILKQTGAY ADAEKAQDSV GIRTGKGKMR
201: NRRYINRKGP LVVYGTEGSK IVKAFRNLPG VDVANVERLN LLDLAPGGHL GRFVIWTQIA FKKLEEVYGT FDAPSQRNGF FLPRPKMTNA DLGRIINSDE
301: VQSVVKPTNK EIKLRKKRRN PLKNVAAVLK LNPYFGTARR MATLVEAARM KARKEKIASK RTRLSPEEAA KVKAAGKAWY ETMISDSDYT EFDVFSKWLG
401: VSQ
001: MAAAAARPLV TIQTLDGDMS TDQSSTVVLP DVMTAPVRPD IVNFVHAQIS NNSRQPYAVS KKAGHQTSAE SWGTGRAVSR IPRVPGGGTH RAGQAAFGNM
101: CRGGRMFAPT KIWRRWHRRV NVNMKRHAIV SAIAATAVPA LVMARGHKIE NVPEMPLVVS DSAEAVEKTS AAIKVLKQIG AYDDAEKAKN SIGIRPGKGK
201: MRNRRYISRK GPLVVYGTEG SKIVKAFRNL PGVELCHVER LNLLKLAPGG HLGRFVIWTK SAFEKLESIY GSFEKPSEKK KGYVLPRAKM VNADLARIIN
301: SDEIQSVVNP IKKDAKRAVL KKNPLKNLNV MLKLNPYAKT AKRMSLLAEA QRVKAKKEKL AKKRKTVTKE EALAIKAAGK SWYKTMISDS DYTEFDNFTK
401: WLGASQ
101: CRGGRMFAPT KIWRRWHRRV NVNMKRHAIV SAIAATAVPA LVMARGHKIE NVPEMPLVVS DSAEAVEKTS AAIKVLKQIG AYDDAEKAKN SIGIRPGKGK
201: MRNRRYISRK GPLVVYGTEG SKIVKAFRNL PGVELCHVER LNLLKLAPGG HLGRFVIWTK SAFEKLESIY GSFEKPSEKK KGYVLPRAKM VNADLARIIN
301: SDEIQSVVNP IKKDAKRAVL KKNPLKNLNV MLKLNPYAKT AKRMSLLAEA QRVKAKKEKL AKKRKTVTKE EALAIKAAGK SWYKTMISDS DYTEFDNFTK
401: WLGASQ
Arabidopsis Description
RPL4A60S ribosomal protein L4-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SF40]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.