Factsheet for GSMUA_Achr5P03060_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr1P23200_001
GSMUA_Achr2P17520_001
GSMUA_Achr3P29390_001
GSMUA_Achr4P11130_001
GSMUA_Achr4P21110_001
GSMUA_Achr4P28510_001
GSMUA_Achr6P08260_001
GSMUA_Achr6P16290_001
GSMUA_Achr7P09070_001
GSMUA_Achr7P14310_001
GSMUA_Achr7P14320_001
GSMUA_Achr7P16760_001
GSMUA_Achr9P21480_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G09630.1	GSMUA_Achr1P23200_001	AT1G17970.1	21798944
AT3G09630.1	GSMUA_Achr3P29390_001	AT1G17970.1	21798944
AT3G09630.1	GSMUA_Achr4P11130_001	AT1G17970.1	21798944
AT3G09630.1	GSMUA_Achr9P21480_001	AT1G17970.1	21798944
AT3G09630.1	GSMUA_Achr7P09070_001	AT3G13720.1	21798944
AT3G09630.1	GSMUA_Achr2P17520_001	AT3G22960.1	21798944
AT3G09630.1	GSMUA_Achr4P21110_001	AT3G22960.1	21798944
AT3G09630.1	GSMUA_Achr4P28510_001	AT3G22960.1	21798944
AT3G09630.1	GSMUA_Achr7P16760_001	AT3G22960.1	21798944
AT5G02870.1	GSMUA_Achr6P08260_001	AT5G22310.1	21798944
AT5G02870.1	GSMUA_Achr6P16290_001	AT5G22310.1	21798944
AT5G02870.1	GSMUA_Achr7P14310_001	AT5G58720.1	21798944
AT5G02870.1	GSMUA_Achr7P14320_001	AT5G58720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P21120_001	Banana	cytosol	95.07	95.07
GSMUA_Achr7P01370_001	Banana	cytosol	14.53	93.65
GSMUA_Achr4P28490_001	Banana	nucleus	14.29	92.06
GSMUA_Achr4P28500_001	Banana	cytosol	24.63	89.29
Solyc09g007250.2.1	Tomato	nucleus	81.28	81.28
Solyc10g084350.1.1	Tomato	nucleus	41.13	81.07
PGSC0003DMT400071725	Potato	cytosol	80.79	80.79
PGSC0003DMT400028707	Potato	cytosol	77.09	80.05
PGSC0003DMT400045381	Potato	cytosol	79.8	79.61
AT3G09630.1	Thale cress	cytosol	78.82	78.82
Bra009560.1-P	Field mustard	cytosol	78.57	78.57
Zm00001d034440_P001	Maize	mitochondrion, plasma membrane	78.08	78.47
Zm00001d013076_P001	Maize	plasma membrane	78.08	78.47
Bra005749.1-P	Field mustard	cytosol	78.33	78.33
CDX70339	Canola	cytosol	78.33	78.33
EER90739	Sorghum	cytosol, plastid	77.83	78.22
CDY44721	Canola	cytosol, extracellular	78.08	78.08
CDX80842	Canola	cytosol	78.08	78.08
CDY10418	Canola	cytosol	78.08	77.89
CDY41596	Canola	cytosol	77.83	77.83
CDY22192	Canola	cytosol	74.88	77.75
CDY41301	Canola	cytosol	74.88	77.75
KXG34535	Sorghum	cytosol	77.34	77.72
Zm00001d018957_P001	Maize	plasma membrane	77.09	77.67
AT5G02870.1	Thale cress	cytosol	77.83	77.64
Os07t0180900-01	Rice	nucleus, plasma membrane	77.34	77.53
CDY11231	Canola	cytosol	74.63	77.3
Zm00001d007824_P001	Maize	plasma membrane	76.6	76.98
Bra029780.1-P	Field mustard	cytosol	76.85	76.85
Os03t0796501-00	Rice	nucleus	75.62	75.99
TraesCS5B01G442100.1	Wheat	cytosol, golgi, nucleus, unclear	75.62	75.99
TraesCS1D01G264200.1	Wheat	cytosol	75.62	75.99
CDX73989	Canola	cytosol	75.86	75.86
TraesCS1B01G274700.2	Wheat	cytosol, nucleus	75.37	75.74
TraesCS5A01G439100.2	Wheat	cytosol, unclear	75.37	75.74
Bra001302.1-P	Field mustard	cytosol	75.62	75.62
TraesCS5D01G446300.2	Wheat	cytosol	75.12	75.5
Solyc10g086010.1.1	Tomato	extracellular	80.3	74.94
HORVU5Hr1G105870.1	Barley	cytosol, plasma membrane	75.12	74.75
TraesCS1A01G354400.1	Wheat	cytosol, extracellular, golgi, unclear	74.14	74.5
Bra034075.1-P	Field mustard	cytosol	70.44	73.52
TraesCS2A01G253600.1	Wheat	cytosol	72.17	72.7
HORVU4Hr1G075710.1	Barley	mitochondrion	74.63	71.46
GSMUA_Achr2P12650_001	Banana	plastid	61.58	62.34
Bra006658.1-P	Field mustard	plastid	12.07	49.49
CDY07934	Canola	cytosol, endoplasmic reticulum, mitochondrion, plasma membrane, plastid	74.88	39.02
KRG89783	Soybean	plastid	4.19	17.71

Protein Annotations

MapMan:17.1.2.1.2	Gene3D:3.40.1370.10	ncoils:Coil	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr5G03060_001
EnsemblPlants:GSMUA_Achr5P03060_001	EnsemblPlants:GSMUA_Achr5T03060_001	InterPro:IPR023574	UniProt:M0SV85	PFAM:PF00573	PFAM:PF14374
ScanProsite:PS00939	PANTHER:PTHR19431	PANTHER:PTHR19431:SF1	InterPro:Ribos_L4_C_dom	InterPro:Ribosomal_L4/L1e	InterPro:Ribosomal_L4/L1e_euk/arc_CS
InterPro:Ribosomal_L4_dom_sf	SUPFAM:SSF52166	UniParc:UPI0002962F1D	SEG:seg	:	:

Description

60S ribosomal protein L4-1 [Source:GMGC_GENE;Acc:GSMUA_Achr5G03060_001]

Coordinates

chr5:-:2086474..2089096

Molecular Weight (calculated)

44745.5 Da

IEP (calculated)

11.218

GRAVY (calculated)

-0.391

Length

406 amino acids

Sequence
(BLAST)

001: MASAAVRPLV TVQALEGDMA TDAPSAVPLP DVLKAPIRPD VVRFVHANLS KNSRQPYAVS KRAGHQTSAE SWGTGRAVSR IPRVPGGGTH RAGQGAFGNM
101: CRGGRMFAPT KTWRRWHRRV NINMRRFAVA SALAASAVPS LVLARGHRIE SVPELPLVVS DSVEGVEKTA SAIKILKQIG ALPDAEKAKD SQGIRSGTGK
201: MRNRRYISRK GPLIVYGTEG SKIVKAFRNI PGVDVANVER LNLLKLAPGG HIGRFIIWTK SAFEKLDSVF GTFDKPSEKK KGYVLPRSKM LNADLSRIIN
301: SDEVQSVVRP IKKEVNRHTL KKNPLKNLYT LLKLNPYAKT ARRMALLAEA QRVKAKKEKL DEKRTQLPKE EAAAIKAAGR AWYKTMISDS DYAEFENFSK
401: WLGVTQ

Best Arabidopsis Sequence Match ( AT3G09630.1 )
(BLAST)

001: MAAAAARPLV TIQTLDGDMS TDQSSTVVLP DVMTAPVRPD IVNFVHAQIS NNSRQPYAVS KKAGHQTSAE SWGTGRAVSR IPRVPGGGTH RAGQAAFGNM
101: CRGGRMFAPT KIWRRWHRRV NVNMKRHAIV SAIAATAVPA LVMARGHKIE NVPEMPLVVS DSAEAVEKTS AAIKVLKQIG AYDDAEKAKN SIGIRPGKGK
201: MRNRRYISRK GPLVVYGTEG SKIVKAFRNL PGVELCHVER LNLLKLAPGG HLGRFVIWTK SAFEKLESIY GSFEKPSEKK KGYVLPRAKM VNADLARIIN
301: SDEIQSVVNP IKKDAKRAVL KKNPLKNLNV MLKLNPYAKT AKRMSLLAEA QRVKAKKEKL AKKRKTVTKE EALAIKAAGK SWYKTMISDS DYTEFDNFTK
401: WLGASQ

Arabidopsis Description

RPL4A60S ribosomal protein L4-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SF40]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.