Factsheet for Solyc10g086010.1.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 3
cytosol 4
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	plastid
EpiLoc:	cytosol
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

plastid: 26371478
unclear: 26455813
nucleus: 28394025
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g096760.1.1
Solyc03g096770.1.1
Solyc03g096780.1.1
Solyc03g118840.2.1
Solyc03g121460.1.1
Solyc05g008840.1.1
Solyc06g007110.2.1
Solyc06g072990.1.1
Solyc06g074190.2.1
Solyc09g082970.2.1
Solyc11g068720.1.1
Solyc12g040390.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G09630.1	Solyc03g118840.2.1	AT1G17970.1	21798944
AT3G09630.1	Solyc05g008840.1.1	AT1G17970.1	21798944
AT3G09630.1	Solyc12g040390.1.1	AT1G17970.1	21798944
AT3G09630.1	Solyc03g121460.1.1	AT3G13720.1	21798944
AT3G09630.1	Solyc09g082970.2.1	AT3G22960.1	21798944
AT5G02870.1	Solyc03g096760.1.1	AT3G49580.1	21798944
AT5G02870.1	Solyc03g096770.1.1	AT3G49580.1	21798944
AT5G02870.1	Solyc03g096780.1.1	AT3G49580.1	21798944
AT5G02870.1	Solyc06g072990.1.1	AT3G49580.1	21798944
AT5G02870.1	Solyc06g074190.2.1	AT5G22310.1	21798944
AT5G02870.1	Solyc11g068720.1.1	AT5G22310.1	21798944
AT5G02870.1	Solyc06g007110.2.1	AT5G58720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400045381	Potato	cytosol	92.64	99.02
Solyc10g084350.1.1	Tomato	nucleus	44.14	93.2
Solyc09g007250.2.1	Tomato	nucleus	85.98	92.12
KRH19796	Soybean	nucleus	77.01	82.72
KRH32387	Soybean	nucleus	76.78	82.47
GSMUA_Achr4P21120_001	Banana	cytosol	75.17	80.54
AT3G09630.1	Thale cress	cytosol	74.94	80.3
GSMUA_Achr5P03060_001	Banana	cytosol	74.94	80.3
Bra009560.1-P	Field mustard	cytosol	74.25	79.56
CDY41301	Canola	cytosol	71.49	79.54
CDY22192	Canola	cytosol	71.49	79.54
CDX70339	Canola	cytosol	74.02	79.31
CDY44721	Canola	cytosol, extracellular	73.79	79.06
CDY10418	Canola	cytosol	73.79	78.87
Bra005749.1-P	Field mustard	cytosol	73.56	78.82
CDY41596	Canola	cytosol	73.56	78.82
AT5G02870.1	Thale cress	cytosol	73.56	78.62
CDX80842	Canola	cytosol	73.33	78.57
CDY11231	Canola	cytosol	70.57	78.32
CDX73989	Canola	cytosol	72.64	77.83
Bra029780.1-P	Field mustard	cytosol	72.64	77.83
GSMUA_Achr4P28490_001	Banana	nucleus	11.26	77.78
Bra001302.1-P	Field mustard	cytosol	72.41	77.59
GSMUA_Achr7P01370_001	Banana	cytosol	11.03	76.19
KRH67633	Soybean	endoplasmic reticulum, mitochondrion	68.51	75.06
Bra034075.1-P	Field mustard	cytosol	66.9	74.81
KRG95915	Soybean	endoplasmic reticulum	72.87	73.72
GSMUA_Achr4P28500_001	Banana	cytosol	18.62	72.32
Zm00001d007824_P001	Maize	plasma membrane	66.44	71.53
TraesCS1B01G274700.2	Wheat	cytosol, nucleus	66.21	71.29
KXG34535	Sorghum	cytosol	66.21	71.29
EER90739	Sorghum	cytosol, plastid	66.21	71.29
Zm00001d013076_P001	Maize	plasma membrane	65.98	71.04
Zm00001d034440_P001	Maize	mitochondrion, plasma membrane	65.98	71.04
TraesCS1D01G264200.1	Wheat	cytosol	65.98	71.04
TraesCS5A01G439100.2	Wheat	cytosol, unclear	65.75	70.79
TraesCS5B01G442100.1	Wheat	cytosol, golgi, nucleus, unclear	65.75	70.79
TraesCS5D01G446300.2	Wheat	cytosol	65.52	70.54
Zm00001d018957_P001	Maize	plasma membrane	65.29	70.47
Os07t0180900-01	Rice	nucleus, plasma membrane	65.52	70.37
Os03t0796501-00	Rice	nucleus	65.06	70.05
TraesCS1A01G354400.1	Wheat	cytosol, extracellular, golgi, unclear	64.37	69.31
HORVU5Hr1G105870.1	Barley	cytosol, plasma membrane	64.83	69.12
HORVU4Hr1G075710.1	Barley	mitochondrion	65.29	66.98
TraesCS2A01G253600.1	Wheat	cytosol	61.38	66.25
KRG96019	Soybean	endoplasmic reticulum, extracellular	13.1	63.33
VIT_15s0045g00110.t01	Wine grape	cytosol	30.11	59.82
Bra006658.1-P	Field mustard	plastid	12.18	53.54
GSMUA_Achr2P12650_001	Banana	plastid	48.97	53.12
CDY07934	Canola	cytosol, endoplasmic reticulum, mitochondrion, plasma membrane, plastid	71.95	40.18
VIT_00s0208g00020.t01	Wine grape	cytosol	28.74	32.22

Protein Annotations

MapMan:17.1.2.1.2	Gene3D:3.40.1370.10	ncoils:Coil	GO:GO:0002181	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0022625	InterPro:IPR023574
UniProt:K4D435	PFAM:PF00573	PFAM:PF14374	ScanProsite:PS00939	PANTHER:PTHR19431	PANTHER:PTHR19431:SF1
InterPro:Ribos_L4_C_dom	InterPro:Ribosomal_L4/L1e	InterPro:Ribosomal_L4/L1e_euk/arc_CS	InterPro:Ribosomal_L4_dom_sf	SUPFAM:SSF52166	EnsemblPlantsGene:Solyc10g086010.1
EnsemblPlants:Solyc10g086010.1.1	UniParc:UPI000276934D	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr10:+:65001776..65004869

Molecular Weight (calculated)

47832.2 Da

IEP (calculated)

10.953

GRAVY (calculated)

-0.372

Length

435 amino acids

Sequence
(BLAST)

001: MEENLASVRP HSVLLLSQTL AAPPSPPLMA TAAAIPTTTV QVFENDMATD GGSAAIPLPA VMKAPIRPDV VTYVHANISK NARQPYAVSR KAGHQTSAES
101: WGTGRAVSRI PRVAGGGTHR AGQAAFGNMC RGGRMFAPTQ IWRRWHRKIP VNQKRYAVVS AIAASSVPSL VLARGHRIES VPELPLVVSD SVEGIEKTSN
201: AIKALKQVGA YPDAEKAKDS HAIRTGKGKM RNRRYISRKG PLIVYGTEGA KLVKAFRNIP GVEICHVERL NLLKLAPGGH LGRFVIWTKS AYEKLDDIYG
301: SFDKPSQKKK GYLLPRPKMV NADLARIINS DEVQSVVRPI KKDVKRATLK KNPLKNLNVL LKLNPYAKTA KRMSLLAEAQ RVKAKNEKLD KKRHQITKEE
401: ASAIRAAGTS WFKTMISDSD YTEFENFTKW LGVTQ

Best Arabidopsis Sequence Match ( AT3G09630.1 )
(BLAST)

001: MAAAAARPLV TIQTLDGDMS TDQSSTVVLP DVMTAPVRPD IVNFVHAQIS NNSRQPYAVS KKAGHQTSAE SWGTGRAVSR IPRVPGGGTH RAGQAAFGNM
101: CRGGRMFAPT KIWRRWHRRV NVNMKRHAIV SAIAATAVPA LVMARGHKIE NVPEMPLVVS DSAEAVEKTS AAIKVLKQIG AYDDAEKAKN SIGIRPGKGK
201: MRNRRYISRK GPLVVYGTEG SKIVKAFRNL PGVELCHVER LNLLKLAPGG HLGRFVIWTK SAFEKLESIY GSFEKPSEKK KGYVLPRAKM VNADLARIIN
301: SDEIQSVVNP IKKDAKRAVL KKNPLKNLNV MLKLNPYAKT AKRMSLLAEA QRVKAKKEKL AKKRKTVTKE EALAIKAAGK SWYKTMISDS DYTEFDNFTK
401: WLGASQ

Arabidopsis Description

RPL4A60S ribosomal protein L4-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SF40]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.