Factsheet for PGSC0003DMT400045381

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400001474
PGSC0003DMT400001475
PGSC0003DMT400001476
PGSC0003DMT400006409
PGSC0003DMT400010646
PGSC0003DMT400014732
PGSC0003DMT400015076
PGSC0003DMT400067737
PGSC0003DMT400069515
PGSC0003DMT400078539

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G09630.1	PGSC0003DMT400014732	AT1G17970.1	21798944
AT3G09630.1	PGSC0003DMT400078539	AT1G17970.1	21798944
AT3G09630.1	PGSC0003DMT400006409	AT3G13720.1	21798944
AT5G02870.1	PGSC0003DMT400001474	AT3G49580.1	21798944
AT5G02870.1	PGSC0003DMT400001475	AT3G49580.1	21798944
AT5G02870.1	PGSC0003DMT400001476	AT3G49580.1	21798944
AT5G02870.1	PGSC0003DMT400069515	AT3G49580.1	21798944
AT5G02870.1	PGSC0003DMT400015076	AT5G22310.1	21798944
AT5G02870.1	PGSC0003DMT400067737	AT5G22310.1	21798944
AT5G02870.1	PGSC0003DMT400010646	AT5G58720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400071725	Potato	cytosol	92.63	92.86
Solyc10g086010.1.1	Tomato	extracellular	99.02	92.64
PGSC0003DMT400028707	Potato	cytosol	86.98	90.54
KRH19796	Soybean	nucleus	82.06	82.47
KRH32387	Soybean	nucleus	81.82	82.22
AT3G09630.1	Thale cress	cytosol	80.34	80.54
GSMUA_Achr4P21120_001	Banana	cytosol	80.1	80.3
GSMUA_Achr5P03060_001	Banana	cytosol	79.61	79.8
Bra009560.1-P	Field mustard	cytosol	79.36	79.56
CDY41301	Canola	cytosol	76.41	79.54
CDY22192	Canola	cytosol	76.41	79.54
CDX70339	Canola	cytosol	79.12	79.31
CDY44721	Canola	cytosol, extracellular	78.87	79.06
CDY10418	Canola	cytosol	78.87	78.87
Bra005749.1-P	Field mustard	cytosol	78.62	78.82
CDY41596	Canola	cytosol	78.62	78.82
AT5G02870.1	Thale cress	cytosol	78.62	78.62
CDX80842	Canola	cytosol	78.38	78.57
CDY11231	Canola	cytosol	75.43	78.32
CDX73989	Canola	cytosol	77.64	77.83
Bra029780.1-P	Field mustard	cytosol	77.64	77.83
GSMUA_Achr4P28490_001	Banana	nucleus	12.04	77.78
Bra001302.1-P	Field mustard	cytosol	77.4	77.59
GSMUA_Achr7P01370_001	Banana	cytosol	11.79	76.19
KRH67633	Soybean	endoplasmic reticulum, mitochondrion	73.22	75.06
Bra034075.1-P	Field mustard	cytosol	71.5	74.81
KRG95915	Soybean	endoplasmic reticulum	77.4	73.26
GSMUA_Achr4P28500_001	Banana	cytosol	19.9	72.32
Zm00001d007824_P001	Maize	plasma membrane	71.25	71.78
KXG34535	Sorghum	cytosol	71.01	71.53
TraesCS1B01G274700.2	Wheat	cytosol, nucleus	70.76	71.29
EER90739	Sorghum	cytosol, plastid	70.76	71.29
Zm00001d013076_P001	Maize	plasma membrane	70.52	71.04
Zm00001d034440_P001	Maize	mitochondrion, plasma membrane	70.52	71.04
TraesCS1D01G264200.1	Wheat	cytosol	70.52	71.04
TraesCS5A01G439100.2	Wheat	cytosol, unclear	70.27	70.79
TraesCS5B01G442100.1	Wheat	cytosol, golgi, nucleus, unclear	70.27	70.79
Zm00001d018957_P001	Maize	plasma membrane	70.02	70.72
TraesCS5D01G446300.2	Wheat	cytosol	70.02	70.54
Os07t0180900-01	Rice	nucleus, plasma membrane	70.02	70.37
Os03t0796501-00	Rice	nucleus	69.78	70.3
TraesCS1A01G354400.1	Wheat	cytosol, extracellular, golgi, unclear	69.29	69.8
HORVU5Hr1G105870.1	Barley	cytosol, plasma membrane	69.29	69.12
HORVU4Hr1G075710.1	Barley	mitochondrion	69.29	66.51
TraesCS2A01G253600.1	Wheat	cytosol	65.85	66.5
KRG96019	Soybean	endoplasmic reticulum, extracellular	14.0	63.33
VIT_15s0045g00110.t01	Wine grape	cytosol	32.19	59.82
Bra006658.1-P	Field mustard	plastid	13.02	53.54
GSMUA_Achr2P12650_001	Banana	plastid	52.09	52.87
CDY07934	Canola	cytosol, endoplasmic reticulum, mitochondrion, plasma membrane, plastid	76.41	39.92
VIT_00s0208g00020.t01	Wine grape	cytosol	30.71	32.22

Protein Annotations

EntrezGene:102590167	MapMan:17.1.2.1.2	Gene3D:3.40.1370.10	ProteinID:AFX67037	ProteinID:AFX67037.1	ncoils:Coil
GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	InterPro:IPR023574	EMBL:JX839754	UniProt:K7XKT4	RefSeq:NP_001275624.1
PFAM:PF00573	PFAM:PF14374	EnsemblPlantsGene:PGSC0003DMG400017608	PGSC:PGSC0003DMG400017608	EnsemblPlants:PGSC0003DMT400045381	ScanProsite:PS00939
PANTHER:PTHR19431	PANTHER:PTHR19431:SF1	InterPro:Ribos_L4_C_dom	InterPro:Ribosomal_L4/L1e	InterPro:Ribosomal_L4/L1e_euk/arc_CS	InterPro:Ribosomal_L4_dom_sf
SUPFAM:SSF52166	UniParc:UPI000294832D	RefSeq:XP_015159030.1	SEG:seg	:	:

Description

60S ribosomal protein L1 [Source:PGSC_GENE;Acc:PGSC0003DMG400017608]

Coordinates

chr10:-:52204837..52208803

Molecular Weight (calculated)

44937.7 Da

IEP (calculated)

10.991

GRAVY (calculated)

-0.429

Length

407 amino acids

Sequence
(BLAST)

001: MATAAAIPTT TVQTFENDMP TDGGSAAIPL PAVMKAPIRP DVVTYVHANI SKNARQPYAV SRKAGHQTSA ESWGTGRAVS RIPRVAGGGT HRAGQAAFGN
101: MCRGGRMFAP TQIWRRWHRK IPVNQKRYAV VSAIAASSVP SLVLARGHRI ESVPELPLVV SDSIEGIEKT SNAIKALKQV GAYPDAEKAK DSHAIRTGKG
201: KMRNRRYISR KGPLIVYGTE GAKLVKAFRN IPGVEICHVE RLNLLKLAPG GHLGRFVIWT KSAYEKLDEI YGSFDKPSQK KKGYLLPRPK MVNADLARII
301: NSDEVQSVVR PIKKDVKRAT LKKNPLKNLN VLLKLNPYAK TAKRMSLLAE AQRVKAKNEK LDKKRHQITK EEASAIRAAG TSWFKTMISD SDYTEFENFT
401: KWLGVTQ

Best Arabidopsis Sequence Match ( AT3G09630.1 )
(BLAST)

001: MAAAAARPLV TIQTLDGDMS TDQSSTVVLP DVMTAPVRPD IVNFVHAQIS NNSRQPYAVS KKAGHQTSAE SWGTGRAVSR IPRVPGGGTH RAGQAAFGNM
101: CRGGRMFAPT KIWRRWHRRV NVNMKRHAIV SAIAATAVPA LVMARGHKIE NVPEMPLVVS DSAEAVEKTS AAIKVLKQIG AYDDAEKAKN SIGIRPGKGK
201: MRNRRYISRK GPLVVYGTEG SKIVKAFRNL PGVELCHVER LNLLKLAPGG HLGRFVIWTK SAFEKLESIY GSFEKPSEKK KGYVLPRAKM VNADLARIIN
301: SDEIQSVVNP IKKDAKRAVL KKNPLKNLNV MLKLNPYAKT AKRMSLLAEA QRVKAKKEKL AKKRKTVTKE EALAIKAAGK SWYKTMISDS DYTEFDNFTK
401: WLGASQ

Arabidopsis Description

RPL4A60S ribosomal protein L4-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SF40]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.