Skip to main content
crop-pal logo
Maize
Search for another protein from :
Maize
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • cytosol 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:cytosol, mitochondrion
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
 extracellular: 20408568
plastid: 22065420
plastid: 23198870
plasma membrane: 23353019
plasma membrane: 23508561
nucleus: 24677780
mitochondrion: 27297264
plasma membrane: 27341663
msms PMID: 24677780 doi
B Guo, Y Chen, C Li, T Wang, R Wang, B Wang, S Hu, X Du, H Xing, X Song, Y Yao, Q Sun, Z Ni
State Key Laboratory for Agrobiotechnology, Key Laboratory of Crop Heterosis and Utilization (MOE), Beijing Key Laboratory of Crop Genetic Improvement, China Agricultural University, Beijing, China; National Plant Gene Research Centre (Beijing), Beijing, China.
msms PMID: 23353019 doi
D Hopff, S Wienkoop, S Lüthje
University of Hamburg, Biocenter Klein Flottbek and Botanical Garden, Plant Physiology, Ohnhorststraße 18, D-22609 Hamburg, Germany.
msms PMID: 27297264 doi
D Dahal, KJ Newton, BP Mooney
Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.
msms PMID: 23198870 doi
M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk
Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.
msms PMID: 27341663 doi
P Voothuluru, JC Anderson, RE Sharp, SC Peck
Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.
msms PMID: 20408568 doi
W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li
Department of Plant Nutrition, China Agricultural University, Beijing, PR China.
msms PMID: 22065420 doi
W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk
Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.
msms PMID: 23508561 doi
Z Zhang, P Voothuluru, M Yamaguchi, RE Sharp, SC Peck
Division of Biochemistry, University of Missouri Columbia, MO, USA ; Christopher S. Bond Life Sciences Center, University of Missouri Columbia, MO, USA ; Interdisciplinary Plant Group, University of Missouri Columbia, MO, USA.
PPI

Inferred distinct locusB in Crop

locusBlocations
Zm00001d000402_P001
Zm00001d003996_P001
Zm00001d011636_P001
Zm00001d017254_P002
Zm00001d018961_P002
Zm00001d025208_P002
Zm00001d034443_P001
Zm00001d037747_P001
Zm00001d038909_P001
Zm00001d039321_P008
Zm00001d039455_P002
Zm00001d043784_P002

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G09630.1 Zm00001d011636_P001 AT1G17970.1 21798944
AT3G09630.1 Zm00001d038909_P001 AT1G17970.1 21798944
AT3G09630.1 Zm00001d043784_P002 AT1G17970.1 21798944
AT3G09630.1 Zm00001d037747_P001 AT3G13720.1 21798944
AT3G09630.1 Zm00001d039455_P002 AT3G13720.1 21798944
AT3G09630.1 Zm00001d018961_P002 AT3G22960.1 21798944
AT3G09630.1 Zm00001d034443_P001 AT3G22960.1 21798944
AT5G02870.1 Zm00001d000402_P001 AT5G22310.1 21798944
AT5G02870.1 Zm00001d003996_P001 AT5G22310.1 21798944
AT5G02870.1 Zm00001d025208_P002 AT5G22310.1 21798944
AT5G02870.1 Zm00001d017254_P002 AT5G58720.1 21798944
AT5G02870.1 Zm00001d039321_P008 AT5G58720.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KXG34535 Sorghum cytosol 96.53 96.53
Zm00001d018957_P001 Maize plasma membrane 95.79 96.03
Os07t0180900-01 Rice nucleus, plasma membrane 91.09 90.86
Zm00001d013076_P001 Maize plasma membrane 88.37 88.37
Zm00001d034440_P001 Maize mitochondrion, plasma membrane 87.87 87.87
TraesCS2A01G253600.1 Wheat cytosol 86.39 86.6
GSMUA_Achr5P03060_001 Banana cytosol 76.98 76.6
GSMUA_Achr4P21120_001 Banana cytosol 76.73 76.35
GSMUA_Achr4P28500_001 Banana cytosol 21.04 75.89
GSMUA_Achr7P01370_001 Banana cytosol 11.63 74.6
AT3G09630.1 Thale cress cytosol 73.76 73.4
CDY44721 Canola cytosol, extracellular 73.51 73.15
CDY41596 Canola cytosol 73.51 73.15
Bra009560.1-P Field mustard cytosol 73.27 72.91
CDX70339 Canola cytosol 73.02 72.66
AT5G02870.1 Thale cress cytosol 73.02 72.48
CDY10418 Canola cytosol 73.02 72.48
PGSC0003DMT400028707 Potato cytosol 70.05 72.38
Bra005749.1-P Field mustard cytosol 72.52 72.17
Bra029780.1-P Field mustard cytosol 72.52 72.17
CDX80842 Canola cytosol 72.28 71.92
CDY22192 Canola cytosol 69.55 71.87
CDY41301 Canola cytosol 69.55 71.87
GSMUA_Achr4P28490_001 Banana nucleus 11.14 71.43
Solyc10g084350.1.1 Tomato nucleus 36.39 71.36
PGSC0003DMT400045381 Potato cytosol 71.78 71.25
CDX73989 Canola cytosol 71.53 71.18
Bra001302.1-P Field mustard cytosol 71.29 70.94
CDY11231 Canola cytosol 68.81 70.92
PGSC0003DMT400071725 Potato cytosol 70.54 70.2
Solyc09g007250.2.1 Tomato nucleus 70.3 69.95
Bra034075.1-P Field mustard cytosol 65.1 67.61
Solyc10g086010.1.1 Tomato extracellular 71.53 66.44
GSMUA_Achr2P12650_001 Banana plastid 49.75 50.12
Bra006658.1-P Field mustard plastid 9.9 40.4
VIT_02s0087g00870.t01 Wine grape cytosol 11.63 38.21
CDY07934 Canola cytosol, endoplasmic reticulum, mitochondrion, plasma membrane, plastid 70.05 36.33
KRG89783 Soybean plastid 4.21 17.71
Protein Annotations
MapMan:17.1.2.1.2Gene3D:3.40.1370.10UniProt:B4FVJ0EMBL:BT041128ncoils:CoilGO:GO:0003674
GO:GO:0003735GO:GO:0005198GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737
GO:GO:0005840GO:GO:0006412GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009987
GO:GO:0019538InterPro:IPR023574ProteinID:ONM27677.1PFAM:PF00573PFAM:PF14374ScanProsite:PS00939
PANTHER:PTHR19431PANTHER:PTHR19431:SF1InterPro:Ribos_L4_C_domInterPro:Ribosomal_L4/L1eInterPro:Ribosomal_L4/L1e_euk/arc_CSInterPro:Ribosomal_L4_dom_sf
SUPFAM:SSF52166UniParc:UPI00017B79F3EnsemblPlantsGene:Zm00001d007824EnsemblPlants:Zm00001d007824_P001EnsemblPlants:Zm00001d007824_T001SEG:seg
Description
60S ribosomal protein L4-1
Coordinates
chr2:-:240327492..240329904
Molecular Weight (calculated)
44414.1 Da
IEP (calculated)
11.199
GRAVY (calculated)
-0.425
Length
404 amino acids
Sequence
(BLAST)
001: MAASSRPLVS VKALEGDMVT DAPGIALPPV FGAPIRPDVV RFTHKLLSCN KRQPYAVSRR AGHQTSAESW GTGRAVSRIP RVPGGGTHRA GQGAFGNMCR
101: GGRMFAPTKI WRKWHRRVNV NLRRVAVASA LAATAVPALV QARGHRIETV PEMPLVISDS AESIEKTSQA LKILKQVGAY ADAEKAKDSV GIRPGKGKMR
201: NRRYINRKGP LVVYGTEGSK VVKAFRNLPG VDVANVERLN LLDLAPGGHL GRFVIWTESA FKKLEEVYGS FDAPSQKKKG FVLPRPKMAN ADLGRIINSD
301: EVQSVVKPLN KEVKRREKRK NPLKNMAAVL KLNPYLGTAR KMATLAEAAR VKARKEKLDS KRTKLTSEET AKVKAAGKAW YKTMISDSDY TEFENFTKWL
401: GVTQ
Best Arabidopsis Sequence Match ( AT3G09630.1 )
(BLAST)
001: MAAAAARPLV TIQTLDGDMS TDQSSTVVLP DVMTAPVRPD IVNFVHAQIS NNSRQPYAVS KKAGHQTSAE SWGTGRAVSR IPRVPGGGTH RAGQAAFGNM
101: CRGGRMFAPT KIWRRWHRRV NVNMKRHAIV SAIAATAVPA LVMARGHKIE NVPEMPLVVS DSAEAVEKTS AAIKVLKQIG AYDDAEKAKN SIGIRPGKGK
201: MRNRRYISRK GPLVVYGTEG SKIVKAFRNL PGVELCHVER LNLLKLAPGG HLGRFVIWTK SAFEKLESIY GSFEKPSEKK KGYVLPRAKM VNADLARIIN
301: SDEIQSVVNP IKKDAKRAVL KKNPLKNLNV MLKLNPYAKT AKRMSLLAEA QRVKAKKEKL AKKRKTVTKE EALAIKAAGK SWYKTMISDS DYTEFDNFTK
401: WLGASQ
Arabidopsis Description
RPL4A60S ribosomal protein L4-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SF40]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.