CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, mitochondrion, plastid, cytosol, plasma membrane

Predictor Summary:

plastid 2
endoplasmic reticulum 1
mitochondrion 2
plasma membrane 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX83878
CDX92969
CDX94878
CDX96741
CDY35484
CDY37482
CDY40829
CDY51733
CDY51734
CDY55133

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G09630.1	CDX83878	AT1G17970.1	21798944
AT3G09630.1	CDX96741	AT1G17970.1	21798944
AT3G09630.1	CDY37482	AT3G13720.1	21798944
AT3G09630.1	CDY51733	AT3G13720.1	21798944
AT3G09630.1	CDY51734	AT3G13720.1	21798944
AT3G09630.1	CDY55133	AT3G13720.1	21798944
AT3G09630.1	CDX92969	AT3G22960.1	21798944
AT3G09630.1	CDX94878	AT3G22960.1	21798944
AT3G09630.1	CDY35484	AT3G22960.1	21798944
AT3G09630.1	CDY40829	AT3G22960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX73989	Canola	cytosol	50.71	97.29
CDY41596	Canola	cytosol	48.27	92.61
CDY44721	Canola	cytosol, extracellular	48.27	92.61
CDY41301	Canola	cytosol	46.08	91.82
CDY22192	Canola	cytosol	45.96	91.56
AT3G09630.1	Thale cress	cytosol	47.63	91.38
CDX70339	Canola	cytosol	47.24	90.64
CDX80842	Canola	cytosol	47.11	90.39
CDY11231	Canola	cytosol	45.44	90.31
CDY10418	Canola	cytosol	46.85	89.68
Solyc10g084350.1.1	Tomato	nucleus	20.92	79.13
KRH19796	Soybean	nucleus	40.69	78.27
KRH32387	Soybean	nucleus	40.56	78.02
PGSC0003DMT400028707	Potato	cytosol	38.64	76.98
PGSC0003DMT400045381	Potato	cytosol	39.92	76.41
Solyc09g007250.2.1	Tomato	nucleus	39.41	75.62
PGSC0003DMT400071725	Potato	cytosol	39.41	75.62
GSMUA_Achr5P03060_001	Banana	cytosol	39.02	74.88
GSMUA_Achr4P21120_001	Banana	cytosol	38.9	74.63
GSMUA_Achr4P28500_001	Banana	cytosol	10.4	72.32
Solyc10g086010.1.1	Tomato	extracellular	40.18	71.95
KRH67633	Soybean	endoplasmic reticulum, mitochondrion	36.2	71.03
TraesCS5B01G442100.1	Wheat	cytosol, golgi, nucleus, unclear	36.71	70.79
TraesCS1B01G274700.2	Wheat	cytosol, nucleus	36.71	70.79
TraesCS5A01G439100.2	Wheat	cytosol, unclear	36.59	70.54
TraesCS1D01G264200.1	Wheat	cytosol	36.59	70.54
TraesCS5D01G446300.2	Wheat	cytosol	36.46	70.3
KRG95915	Soybean	endoplasmic reticulum	38.77	70.23
Zm00001d007824_P001	Maize	plasma membrane	36.33	70.05
HORVU5Hr1G105870.1	Barley	cytosol, plasma membrane	36.46	69.61
KXG34535	Sorghum	cytosol	35.94	69.31
EER90739	Sorghum	cytosol, plastid	35.82	69.06
TraesCS1A01G354400.1	Wheat	cytosol, extracellular, golgi, unclear	35.82	69.06
Zm00001d013076_P001	Maize	plasma membrane	35.69	68.81
Zm00001d018957_P001	Maize	plasma membrane	35.56	68.73
Zm00001d034440_P001	Maize	mitochondrion, plasma membrane	35.43	68.32
Os07t0180900-01	Rice	nucleus, plasma membrane	35.43	68.15
HORVU4Hr1G075710.1	Barley	mitochondrion	36.71	67.45
Os03t0796501-00	Rice	nucleus	34.66	66.83
TraesCS2A01G253600.1	Wheat	cytosol	34.53	66.75
GSMUA_Achr4P28490_001	Banana	nucleus	5.39	66.67
GSMUA_Achr7P01370_001	Banana	cytosol	5.39	66.67
KRG96019	Soybean	endoplasmic reticulum, extracellular	6.16	53.33
VIT_15s0045g00110.t01	Wine grape	cytosol	14.89	52.97
GSMUA_Achr2P12650_001	Banana	plastid	24.9	48.38
VIT_00s0208g00020.t01	Wine grape	cytosol	14.63	29.38

Protein Annotations

MapMan:17.1.2.1.2	Gene3D:3.40.1370.10	GO:A0A078F4H0	UniProt:A0A078F4H0	EnsemblPlants:CDY07934	ProteinID:CDY07934
ProteinID:CDY07934.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00125137001	InterPro:IPR023574
InterPro:NAM-associated_C	PFAM:PF00573	PFAM:PF14303	PFAM:PF14374	ScanProsite:PS00939	PANTHER:PTHR19431
PANTHER:PTHR19431:SF1	InterPro:Ribos_L4_C_dom	InterPro:Ribosomal_L4/L1e	InterPro:Ribosomal_L4/L1e_euk/arc_CS	InterPro:Ribosomal_L4_dom_sf	SUPFAM:SSF52166
TMHMM:TMhelix	UniParc:UPI0004EE01E4	SEG:seg	:	:	:

Description

BnaC03g35890DBnaC03g35890D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F4H0]

Coordinates

chrLK031982:+:186845..192963

Molecular Weight (calculated)

87221.9 Da

IEP (calculated)

10.789

GRAVY (calculated)

-0.435

Length

779 amino acids

Sequence
(BLAST)

001: MKTRSLITDA KGRLLTDTCL KLIGKRKNGT RCFVSVLHFS ISLFLSSFSP LQAIEKAIYL LRRGCSSSRW LSRRVLLTKE NGIPSIGWSH RRRIMVRSLF
101: FAVALLLLGG WKGKDEFNDV VKLTHQIFYN NHQKRFTLEH AWKELRNDQK WCDLTSAKND GSSKKRKCED PADSSTYEAT DSKRPPGVKA AKATGKNKEV
201: QQHTMNEFQN MWTIREKDMA VKERMAKMSL LEGLIGRTEG LDEEEKLLKK KLITDVRQYT FGNHVASCHG SGEWSGVTIV TGVESGVESH VLSCNSLSQL
301: IKRFHSFNKK KTVSEGLVSQ HFKSVHQLYV CWRMVLPLMR STNTSGSVQP RYASKTRRRL TVREETQTLK VREMATAAAR PLVTVQGLDN DMTTDQSPTV
401: VLPNVMTAPV RPDIVSFVHA QISNNSRQPY AVSTKSGHQT SAESWGTGRA VSRIPRVPGG GTHRAGQAAF GNQCRGGRMF APTKVYRLWH RRVNVNMKRH
501: AIVSAIAATA VPALVVARGH KIENVPEMPL VVSDSVEAVE KTSAAIKVLK QIGAYDDAEK AKESIGIRSG VGKMRNRRYV SRKGPLVVYG TEGSKIVKAF
601: RNLPGVELCH VERLNLLKLA PGGHLGRFVV WTKSAFEKLE GIYGSFEKGS EKKKGYVLPR AKMVNADLAR IINSDEVQSV VTPIEKDATR KVMKKNPLKN
701: LNVMLKLNPY AKTAKRMSLL AEAERVKAKK EKLAKKRKTV TKEESLAIKA AGKSWHQTMI SDSDYTDFDN FTKWLCASQ

Best Arabidopsis Sequence Match ( AT3G09630.1 )
(BLAST)

001: MAAAAARPLV TIQTLDGDMS TDQSSTVVLP DVMTAPVRPD IVNFVHAQIS NNSRQPYAVS KKAGHQTSAE SWGTGRAVSR IPRVPGGGTH RAGQAAFGNM
101: CRGGRMFAPT KIWRRWHRRV NVNMKRHAIV SAIAATAVPA LVMARGHKIE NVPEMPLVVS DSAEAVEKTS AAIKVLKQIG AYDDAEKAKN SIGIRPGKGK
201: MRNRRYISRK GPLVVYGTEG SKIVKAFRNL PGVELCHVER LNLLKLAPGG HLGRFVIWTK SAFEKLESIY GSFEKPSEKK KGYVLPRAKM VNADLARIIN
301: SDEIQSVVNP IKKDAKRAVL KKNPLKNLNV MLKLNPYAKT AKRMSLLAEA QRVKAKKEKL AKKRKTVTKE EALAIKAAGK SWYKTMISDS DYTEFDNFTK
401: WLGASQ

Arabidopsis Description

RPL4A60S ribosomal protein L4-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SF40]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.